Detail Information

Basic Information:


  VIRBase ID:  

HHID00068140

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-374b-3p:           STK33:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-374b-3p STK33
miRBase
Accession/Entrez ID		 MIMAT0004956 65975
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR STK33
chr11:8569785(-) A-I      intronic
chr11:8561676(-) A-I      intronic
chr11:8524804(-) A-I      intronic
chr11:8504559(-) A-I      intronic
chr11:8508869(-) A-I      intronic
chr11:8569776(-) A-I      intronic
chr11:8504467(-) A-I      intronic
chr11:8504458(-) A-I      intronic
chr11:8504444(-) A-I      intronic
chr11:8569786(-) A-I      intronic
chr11:8569784(-) A-I      intronic
chr11:8504441(-) A-I      intronic
chr11:8441574(-) A-I      intronic
chr11:8441563(-) A-I      intronic
chr11:8441556(-) A-I      intronic
chr11:8569781(-) A-I      intronic
chr11:8569770(-) A-I      intronic
chr11:8569725(-) A-I      intronic
chr11:8441554(-) A-I      intronic
chr11:8607564(-) A-I      intronic
chr11:8426631(-) A-I      intronic
chr11:8568424(-) A-I      intronic
chr11:8565231(-) A-I      intronic
chr11:8508925(-) A-I      intronic
chr11:8561707(-) A-I      intronic
chr11:8500858(-) A-I      intronic
chr11:8559694(-) A-I      intronic
chr11:8561981(-) A-I      intronic
chr11:8500727(-) A-I      intronic
chr11:8593213(-) A-I      intronic
chr11:8501145(-) A-I      intronic
chr11:8529688(-) A-I      intronic
chr11:8564477(-) A-I      intronic
chr11:8558695(-) A-I      intronic
chr11:8558426(-) A-I      intronic
chr11:8495659(-) A-I      intronic
chr11:8495646(-) A-I      intronic
chr11:8463002(-) A-I      intronic
chr11:8462971(-) A-I      intronic
chr11:8593206(-) A-I      intronic
chr11:8529670(-) A-I      intronic
chr11:8558665(-) A-I      intronic
chr11:8462970(-) A-I      intronic
chr11:8530507(-) A-I      intronic
chr11:8593191(-) A-I      intronic
chr11:8588618(-) A-I      intronic
chr11:8529665(-) A-I      intronic
chr11:8588575(-) A-I      intronic
chr11:8529657(-) A-I      intronic
chr11:8462961(-) A-I      intronic
chr11:8529656(-) A-I      intronic
chr11:8526284(-) A-I      intronic
chr11:8442464(-) A-I      intronic
chr11:8588559(-) A-I      intronic
chr11:8529851(-) A-I      intronic
chr11:8578634(-) A-I      intronic
chr11:8510721(-) A-I      intronic
chr11:8578618(-) A-I      intronic
chr11:8510682(-) A-I      intronic
chr11:8608126(-) A-I      intronic
chr11:8608154(-) A-I      intronic
chr11:8510571(-) A-I      intronic
chr11:8578606(-) A-I      intronic
chr11:8504450(-) A-I      intronic
chr11:8504415(-) A-I      intronic
chr11:8578580(-) A-I      intronic
chr11:8501207(-) A-I      intronic
chr11:8500868(-) A-I      intronic
chr11:8493722(-) A-I      intronic
chr11:8564461(-) A-I      intronic
chr11:8559295(-) A-I      intronic
chr11:8530034(-) A-I      intronic
chr11:8607655(-) A-I      intronic
chr11:8559300(-) A-I      intronic
chr11:8529954(-) A-I      intronic
chr11:8501268(-) A-I      intronic
chr11:8561847(-) A-I      intronic
chr11:8564424(-) A-I      intronic
chr11:8561932(-) A-I      intronic
chr11:8561924(-) A-I      intronic
chr11:8574621(-) A-I      intronic
chr11:8574620(-) A-I      intronic
chr11:8530070(-) A-I      intronic
chr11:8559600(-) A-I      intronic
chr11:8547752(-) A-I      intronic
chr11:8607422(-) A-I      intronic
chr11:8526233(-) A-I      intronic
chr11:8574502(-) A-I      intronic
chr11:8510742(-) A-I      intronic
chr11:8572805(-) A-I      intronic
chr11:8574454(-) A-I      intronic
chr11:8559477(-) A-I      intronic
chr11:8572958(-) A-I      intronic
chr11:8501205(-) A-I      intronic
chr11:8608289(-) A-I      intronic
chr11:8452638(-) A-I      intronic
chr11:8608288(-) A-I      intronic
chr11:8608168(-) A-I      intronic
chr11:8608153(-) A-I      intronic
chr11:8607537(-) A-I      intronic
chr11:8559651(-) A-I      intronic
chr11:8607444(-) A-I      intronic
chr11:8607435(-) A-I      intronic
chr11:8495600(-) A-I      intronic
chr11:8530498(-) A-I      intronic
chr11:8607384(-) A-I      intronic
chr11:8572890(-) A-I      intronic
chr11:8501384(-) A-I      intronic
chr11:8607212(-) A-I      intronic
chr11:8572792(-) A-I      intronic
chr11:8561810(-) A-I      intronic
chr11:8572801(-) A-I      intronic
chr11:8572731(-) A-I      intronic
chr11:8572715(-) A-I      intronic
chr11:8602942(-) A-I      intronic
chr11:8559294(-) A-I      intronic
chr11:8529575(-) A-I      intronic
chr11:8559197(-) A-I      intronic
chr11:8552439(-) A-I      intronic
chr11:8552417(-) A-I      intronic
chr11:8552415(-) A-I      intronic
chr11:8552414(-) A-I      intronic
chr11:8552406(-) A-I      intronic
chr11:8526311(-) A-I      intronic
chr11:8548750(-) A-I      intronic
chr11:8548739(-) A-I      intronic
chr11:8547937(-) A-I      intronic
chr11:8547903(-) A-I      intronic
chr11:8529620(-) A-I      intronic
chr11:8547877(-) A-I      intronic
chr11:8530606(-) A-I      intronic
chr11:8510685(-) A-I      intronic
chr11:8530601(-) A-I      intronic
chr11:8510614(-) A-I      intronic
chr11:8530106(-) A-I      intronic
chr11:8530053(-) A-I      intronic
chr11:8529960(-) A-I      intronic
chr11:8510777(-) A-I      intronic
chr11:8572949(-) A-I      intronic
chr11:8607639(-) A-I      intronic
chr11:8561825(-) A-I      intronic
chr11:8606631(-) A-I      intronic
chr11:8504481(-) A-I      intronic
chr11:8575388(-) A-I      intronic
chr11:8572841(-) A-I      intronic
chr11:8501306(-) A-I      intronic
chr11:8561809(-) A-I      intronic
chr11:8607235(-) A-I      intronic
chr11:8564381(-) A-I      intronic
chr11:8607274(-) A-I      intronic
chr11:8559650(-) A-I      intronic
chr11:8529520(-) A-I      intronic
chr11:8500897(-) A-I      intronic
chr11:8529616(-) A-I      intronic
chr11:8559489(-) A-I      intronic
chr11:8559516(-) A-I      intronic
chr11:8552511(-) A-I      intronic
chr11:8529887(-) A-I      intronic
chr11:8530523(-) A-I      intronic
chr11:8547698(-) A-I      intronic
chr11:8568301(-) A-I      intronic
chr11:8530104(-) A-I      intronic
chr11:8561907(-) A-I      intronic
chr11:8561910(-) A-I      intronic
chr11:8530113(-) A-I      intronic
chr11:8493771(-) A-I      intronic
chr11:8575777(-) A-I      intronic
chr11:8510696(-) A-I      intronic
chr11:8564421(-) A-I      intronic
chr11:8574506(-) A-I      intronic
chr11:8510634(-) A-I      intronic
chr11:8417788(-) A-I      intronic
chr11:8508874(-) A-I      intronic
chr11:8526283(-) A-I      intronic
chr11:8547817(-) A-I      intronic
chr11:8606585(-) A-I      intronic
chr11:8530046(-) A-I      intronic
chr11:8574581(-) A-I      intronic
chr11:8606566(-) A-I      intronic
chr11:8574441(-) A-I      intronic
chr11:8548804(-) A-I      intronic
chr11:8529546(-) A-I      intronic
chr11:8529553(-) A-I      intronic
chr11:8565182(-) A-I      intronic
chr11:8607357(-) A-I      intronic
chr11:8529822(-) A-I      intronic
chr11:8561824(-) A-I      intronic
chr11:8565228(-) A-I      intronic
chr11:8572817(-) A-I      intronic
chr11:8564373(-) A-I      intronic
chr11:8607491(-) A-I      intronic
chr11:8607733(-) A-I      intronic
chr11:8548615(-) A-I      intronic
chr11:8559652(-) A-I      intronic
chr11:8608271(-) A-I      intronic
chr11:8570021(-) A-I      intronic
chr11:8547931(-) A-I      intronic
chr11:8529697(-) A-I      intronic
chr11:8607681(-) A-I      intronic
chr11:8547827(-) A-I      intronic
chr11:8574579(-) A-I      intronic
chr11:8529484(-) A-I      intronic
chr11:8559704(-) A-I      intronic
chr11:8606663(-) A-I      intronic
chr11:8574453(-) A-I      intronic
chr11:8575866(-) A-I      intronic
chr11:8474125(-) A-I      intronic
chr11:8561994(-) A-I      intronic
chr11:8501338(-) A-I      intronic
chr11:8530447(-) A-I      intronic
chr11:8606608(-) A-I      intronic
chr11:8568257(-) A-I      intronic
chr11:8526312(-) A-I      intronic
chr11:8558401(-) A-I      intronic
chr11:8510763(-) A-I      intronic
chr11:8508720(-) A-I      intronic
chr11:8561817(-) A-I      intronic
chr11:8568295(-) A-I      intronic
chr11:8547857(-) A-I      intronic
chr11:8526275(-) A-I      intronic
chr11:8501278(-) A-I      intronic
chr11:8607345(-) A-I      intronic
chr11:8547856(-) A-I      intronic
chr11:8529558(-) A-I      intronic
chr11:8529523(-) A-I      intronic
chr11:8607524(-) A-I      intronic
chr11:8571964(-) A-I      intronic
chr11:8452581(-) A-I      intronic
chr11:8548796(-) A-I      intronic
chr11:8529602(-) A-I      intronic
chr11:8572873(-) A-I      intronic
chr11:8575507(-) A-I      intronic
chr11:8606770(-) A-I      intronic
chr11:8558664(-) A-I      intronic
chr11:8569892(-) A-I      intronic
chr11:8559265(-) A-I      intronic
chr11:8529884(-) A-I      intronic
chr11:8574603(-) A-I      intronic
chr11:8591404(-) A-I      intronic
chr11:8559613(-) A-I      intronic
chr11:8555577(-) A-I      intronic
chr11:8561916(-) A-I      intronic
chr11:8564459(-) A-I      intronic
chr11:8606646(-) A-I      intronic
chr11:8530563(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED STK33
chr11:8565182(-) A-G intron -    22484847
chr11:8565228(-) A-G intron -    22484847
chr11:8568257(-) A-G intron -    22484847
chr11:8568295(-) A-G intron -    22484847
chr11:8568301(-) A-G intron -    22484847
chr11:8570021(-) A-G intron -    22484847
chr11:8501306(-) A-G intron -    22484847
chr11:8530113(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase STK33
chr11:8413856-8413857(-) m6A 3'UTR//exon       27773535
chr11:8413976-8413977(-) m6A 3'UTR//exon       24209618//24981863
chr11:8414026-8414027(-) m6A 3'UTR//exon       24981863//22608085
chr11:8414037-8414038(-) m6A 3'UTR//exon       24981863//22608085
chr11:8414062-8414063(-) m6A CDS//exon       24981863//22608085
chr11:8414073-8414074(-) m6A CDS//exon       24981863//22608085
chr11:8414115-8414116(-) m6A CDS//exon       24981863
chr11:8414139-8414140(-) m6A CDS//exon       24981863
chr11:8435153-8435154(-) m6A CDS//exon//intron       24981863
chr11:8486265-8486266(-) m6A 5'UTR//CDS//exon//intron       24981863
chr11:8486296-8486297(-) m6A 5'UTR//CDS//exon//intron       24981863
chr11:8486304-8486305(-) m6A 5'UTR//CDS//exon//intron       24981863
chr11:8489195-8489196(-) m6A exon//intron       24981863
chr11:8494813-8494814(-) m6A CDS//intron       24981863
chr11:8496319-8496320(-) m6A CDS//exon//intron       24981863//22608085
chr11:8496358-8496359(-) m6A 5'UTR//CDS//exon//intron       24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-374b-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
STK33
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-374b-3p
Interactor2: STK33

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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