Detail Information

Basic Information:


  VIRBase ID:  

HHID00068135

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-374b-3p:           USP31:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-374b-3p USP31
miRBase
Accession/Entrez ID		 MIMAT0004956 57478
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR USP31
chr16:23148858(-) A-I      intronic
chr16:23138876(-) A-I      intronic
chr16:23076024(-) A-I      3'UTR
chr16:23138881(-) A-I      intronic
chr16:23074911(-) A-I      3'UTR
chr16:23138899(-) A-I      intronic
chr16:23138886(-) A-I      intronic
chr16:23138895(-) A-I      intronic
chr16:23148863(-) A-I      intronic
chr16:23148879(-) A-I      intronic
chr16:23138880(-) A-I      intronic
chr16:23155938(-) A-I      intronic
chr16:23158502(-) A-I      intronic
chr16:23155893(-) A-I      intronic
chr16:23156029(-) A-I      intronic
chr16:23158433(-) A-I      intronic
chr16:23157762(-) A-I      intronic
chr16:23158461(-) A-I      intronic
chr16:23158567(-) A-I      intronic
chr16:23158605(-) A-I      intronic
chr16:23159248(-) A-I      intronic
chr16:23156027(-) A-I      intronic
chr16:23130211(-) A-I      intronic
chr16:23130212(-) A-I      intronic
chr16:23130492(-) A-I      intronic
chr16:23130557(-) A-I      intronic
chr16:23130694(-) A-I      intronic
chr16:23130710(-) A-I      intronic
chr16:23138490(-) A-I      intronic
chr16:23138629(-) A-I      intronic
chr16:23138636(-) A-I      intronic
chr16:23138677(-) A-I      intronic
chr16:23138734(-) A-I      intronic
chr16:23138738(-) A-I      intronic
chr16:23138806(-) A-I      intronic
chr16:23138838(-) A-I      intronic
chr16:23150640(-) A-I      intronic
chr16:23155848(-) A-I      intronic
chr16:23137496(-) A-I      intronic
chr16:23159258(-) A-I      intronic
chr16:23158432(-) A-I      intronic
chr16:23130516(-) A-I      intronic
chr16:23158703(-) A-I      intronic
chr16:23158455(-) A-I      intronic
chr16:23159250(-) A-I      intronic
chr16:23159263(-) A-I      intronic
chr16:23158636(-) A-I      intronic
chr16:23155960(-) A-I      intronic
chr16:23130485(-) A-I      intronic
chr16:23152791(-) A-I      intronic
chr16:23157737(-) A-I      intronic
chr16:23159252(-) A-I      intronic
chr16:23130314(-) A-I      intronic
chr16:23130154(-) A-I      intronic
chr16:23138932(-) A-I      intronic
chr16:23159183(-) A-I      intronic
chr16:23138922(-) A-I      intronic
chr16:23130232(-) A-I      intronic
chr16:23159130(-) A-I      intronic
chr16:23150467(-) A-I      intronic
chr16:23129341(-) A-I      intronic
chr16:23152917(-) A-I      intronic
chr16:23158541(-) A-I      intronic
chr16:23158991(-) A-I      intronic
chr16:23159031(-) A-I      intronic
chr16:23139071(-) A-I      intronic
chr16:23129176(-) A-I      intronic
chr16:23158526(-) A-I      intronic
chr16:23130487(-) A-I      intronic
chr16:23159246(-) A-I      intronic
chr16:23159003(-) A-I      intronic
chr16:23156075(-) A-I      intronic
chr16:23138672(-) A-I      intronic
chr16:23157758(-) A-I      intronic
chr16:23156076(-) A-I      intronic
chr16:23129248(-) A-I      intronic
chr16:23158702(-) A-I      intronic
chr16:23159134(-) A-I      intronic
chr16:23090761(-) A-I      intronic
chr16:23158465(-) A-I      intronic
chr16:23159269(-) A-I      intronic
chr16:23129389(-) A-I      intronic
chr16:23158554(-) A-I      intronic
chr16:23155897(-) A-I      intronic
chr16:23129217(-) A-I      intronic
chr16:23139072(-) A-I      intronic
chr16:23159136(-) A-I      intronic
chr16:23159179(-) A-I      intronic
chr16:23158594(-) A-I      intronic
chr16:23159057(-) A-I      intronic
chr16:23149166(-) A-I      intronic
chr16:23149200(-) A-I      intronic
chr16:23155102(-) A-I      intronic
chr16:23159182(-) A-I      intronic
chr16:23130517(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED USP31
chr16:23129389(-) A-G intron -    22484847
chr16:23158703(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase USP31
chr16:23072818-23072819(-) m6A 3'UTR       27773535
chr16:23075426-23075427(-) m6A 3'UTR       27773535
chr16:23075450-23075451(-) m6A 3'UTR       27773535
chr16:23075570-23075571(-) m6A 3'UTR       24981863//27773535//22608085
chr16:23075582-23075583(-) m6A 3'UTR       24981863//27773535//22608085
chr16:23075655-23075656(-) m6A 3'UTR       27773535//22608085
chr16:23075703-23075704(-) m6A 3'UTR       27773535//22608085
chr16:23075761-23075762(-) m6A 3'UTR       24981863//27773535//22608085
chr16:23075869-23075870(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr16:23075898-23075899(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr16:23075924-23075925(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr16:23076102-23076103(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr16:23076248-23076249(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr16:23076274-23076275(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr16:23076320-23076321(-) m6A 3'UTR       27773535
chr16:23076344-23076345(-) m6A 3'UTR       27773535
chr16:23078692-23078693(-) m6A 3'UTR       27773535
chr16:23078869-23078870(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:23078885-23078886(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:23078905-23078906(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:23078950-23078951(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:23079015-23079016(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:23079023-23079024(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:23079059-23079060(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:23079143-23079144(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr16:23079166-23079167(-) m6A 3'UTR       24209618//27773535//22608085
chr16:23079315-23079316(-) m6A 3'UTR       24981863//27773535
chr16:23079375-23079376(-) m6A CDS       24284625//24981863//27773535
chr16:23079398-23079399(-) m6A CDS       24284625//24981863//27773535
chr16:23079475-23079476(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr16:23079519-23079520(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:23079535-23079536(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:23079631-23079632(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:23079686-23079687(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr16:23079713-23079714(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr16:23079723-23079724(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr16:23079757-23079758(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr16:23079772-23079773(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr16:23079900-23079901(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr16:23079945-23079946(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr16:23079973-23079974(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr16:23079980-23079981(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr16:23080111-23080112(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:23080296-23080297(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr16:23080371-23080372(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr16:23080429-23080430(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:23080504-23080505(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:23080521-23080522(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:23080549-23080550(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:23080564-23080565(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:23080653-23080654(-) m6A CDS       24284625//25456834//24981863//27371828//22575960//22608085
chr16:23080675-23080676(-) m6A CDS       24284625//25456834//24981863//27371828//22575960//22608085
chr16:23091098-23091099(-) m6A CDS//intron       24981863
chr16:23091331-23091332(-) m6A CDS       24209618//24981863//27773535//22608085
chr16:23091340-23091341(-) m6A CDS       24209618//24981863//27773535//22608085
chr16:23091351-23091352(-) m6A CDS       24209618//24981863//27371828//22608085
chr16:23091433-23091434(-) m6A CDS       24209618//24981863//22608085
chr16:23091463-23091464(-) m6A CDS       24209618//24981863//22608085
chr16:23091471-23091472(-) m6A CDS       24209618
chr16:23091484-23091485(-) m6A CDS       24209618
chr16:23096964-23096965(-) m6A CDS       27773535
chr16:23099149-23099150(-) m6A CDS       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-374b-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
USP31
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-374b-3p
Interactor2: USP31

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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