Detail Information

Basic Information:


  VIRBase ID:  

HHID00067706

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-33b-3p:           BTBD3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-33b-3p BTBD3
miRBase
Accession/Entrez ID		 MIMAT0004811 22903
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - dJ742J24.1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-33b-3p
rs1014636340 chr17:17813869    C/T
rs1175344913 chr17:17813860    C/T
rs1212055173 chr17:17813859    G/C
rs1333766161 chr17:17813870    G/A
rs1359466877 chr17:17813864    A/G
rs751021350 chr17:17813857    G/A
rs1272832890 chr17:17813873    G/A
rs1296048342 chr17:17813872    G/A
rs1399118390 chr17:17813874    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR BTBD3
chr20:11875468(+) A-I      intronic
chr20:11875474(+) A-I      intronic
chr20:11878619(+) A-I      intronic
chr20:11875461(+) A-I      intronic
chr20:11878629(+) A-I      intronic
chr20:11878645(+) A-I      intronic
chr20:11876007(+) A-I      intronic
chr20:11875464(+) A-I      intronic
chr20:11876005(+) A-I      intronic
chr20:11875972(+) A-I      intronic
chr20:11876022(+) A-I      intronic
chr20:11876008(+) A-I      intronic
chr20:11878620(+) A-I      intronic
chr20:11878630(+) A-I      intronic
chr20:11884341(+) A-I      intronic
chr20:11889737(+) A-I      intronic
chr20:11884355(+) A-I      intronic
chr20:11884274(+) A-I      intronic
chr20:11889663(+) A-I      intronic
chr20:11889819(+) A-I      intronic
chr20:11881541(+) A-I      intronic
chr20:11887180(+) A-I      intronic
chr20:11884519(+) A-I      intronic
chr20:11889828(+) A-I      intronic
chr20:11889801(+) A-I      intronic
chr20:11889802(+) A-I      intronic
chr20:11878686(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase BTBD3
chr20:11898563-11898564(+) m6A 5'UTR//intron       24981863//22575960
chr20:11898671-11898672(+) m6A 5'UTR//intron       24981863
chr20:11898879-11898880(+) m6A 5'UTR//intron       24284625//22608085
chr20:11898910-11898911(+) m6A 5'UTR//intron       24284625//22575960//22608085
chr20:11898945-11898946(+) m6A CDS//intron       24284625//24981863//22575960//22608085
chr20:11898993-11898994(+) m6A 5'UTR//CDS       24284625//24981863//22575960//22608085
chr20:11899091-11899092(+) m6A 5'UTR//CDS       24284625//24981863//26404942//22608085
chr20:11899103-11899104(+) m1A 5'UTR//CDS       26863196
chr20:11899215-11899216(+) m6A CDS       24981863
chr20:11900457-11900458(+) m6A 3'UTR//CDS//exon       24284625
chr20:11903396-11903397(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//22575960//22608085
chr20:11903460-11903461(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//22575960//22608085
chr20:11903546-11903547(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr20:11903573-11903574(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr20:11903777-11903778(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22575960//22608085
chr20:11904025-11904026(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr20:11904057-11904058(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr20:11904135-11904136(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr20:11904175-11904176(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr20:11904190-11904191(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr20:11904295-11904296(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr20:11904316-11904317(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr20:11904564-11904565(+) m6A 3'UTR       24284625//22608085
chr20:11904673-11904674(+) m6A 3'UTR       24981863//22608085
chr20:11904707-11904708(+) m6A 3'UTR       24981863//22608085
chr20:11904712-11904713(+) m6A 3'UTR       24981863
chr20:11904731-11904732(+) m6A 3'UTR       24981863
chr20:11904739-11904740(+) m6A 3'UTR       24981863
chr20:11905313-11905314(+) Y 3'UTR       25192136

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-33b-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
BTBD3
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-33b-3p
Cisplatin 5702198       27559850

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-33b-3p
Interactor2: BTBD3

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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