Detail Information

Basic Information:


  VIRBase ID:  

HHID00067701

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-33b-3p:           HBS1L:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-33b-3p HBS1L
miRBase
Accession/Entrez ID		 MIMAT0004811 10767
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - EF-1a//eRF3c//ERFS//HBS1//HSPC276

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-33b-3p
rs1014636340 chr17:17813869    C/T
rs1175344913 chr17:17813860    C/T
rs1212055173 chr17:17813859    G/C
rs1333766161 chr17:17813870    G/A
rs1359466877 chr17:17813864    A/G
rs751021350 chr17:17813857    G/A
rs1272832890 chr17:17813873    G/A
rs1296048342 chr17:17813872    G/A
rs1399118390 chr17:17813874    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR HBS1L
chr6:135337193(-) A-I      intronic
chr6:135337194(-) A-I      intronic
chr6:135337192(-) A-I      intronic
chr6:135311837(-) A-I      intronic
chr6:135348982(-) A-I      intronic
chr6:135370881(-) A-I      intronic
chr6:135313094(-) A-I      intronic
chr6:135356505(-) A-I      intronic
chr6:135370847(-) A-I      intronic
chr6:135370848(-) A-I      intronic
chr6:135370874(-) A-I      intronic
chr6:135349151(-) A-I      intronic
chr6:135349108(-) A-I      intronic
chr6:135348962(-) A-I      intronic
chr6:135348958(-) A-I      intronic
chr6:135336787(-) A-I      intronic
chr6:135311985(-) A-I      intronic
chr6:135332792(-) A-I      intronic
chr6:135311962(-) A-I      intronic
chr6:135311940(-) A-I      intronic
chr6:135313123(-) A-I      intronic
chr6:135311781(-) A-I      intronic
chr6:135356757(-) A-I      intronic
chr6:135336816(-) A-I      intronic
chr6:135373624(-) A-I      intronic
chr6:135337052(-) A-I      intronic
chr6:135356425(-) A-I      intronic
chr6:135337156(-) A-I      intronic
chr6:135353099(-) A-I      intronic
chr6:135336129(-) A-I      intronic
chr6:135313001(-) A-I      intronic
chr6:135336116(-) A-I      intronic
chr6:135332536(-) A-I      intronic
chr6:135311853(-) A-I      intronic
chr6:135336817(-) A-I      intronic
chr6:135311809(-) A-I      intronic
chr6:135356476(-) A-I      intronic
chr6:135336137(-) A-I      intronic
chr6:135332627(-) A-I      intronic
chr6:135349093(-) A-I      intronic
chr6:135349071(-) A-I      intronic
chr6:135289394(-) A-I      intronic
chr6:135337162(-) A-I      intronic
chr6:135336971(-) A-I      intronic
chr6:135356767(-) A-I      intronic
chr6:135332542(-) A-I      intronic
chr6:135349104(-) A-I      intronic
chr6:135336772(-) A-I      intronic
chr6:135348974(-) A-I      intronic
chr6:135331035(-) A-I      intronic
chr6:135349155(-) A-I      intronic
chr6:135355599(-) A-I      intronic
chr6:135332786(-) A-I      intronic
chr6:135349010(-) A-I      intronic
chr6:135348971(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED HBS1L
chr6:135306727(-) A-G intron -    22484847
chr6:135294976(-) C-T intron -    22484847
chr6:135294978(-) T-C intron -    22484847
chr6:135311853(-) A-G intron -    22484847
chr6:135332383(-) C-T intron -    22484847
chr6:135332627(-) A-G intron -    22484847
chr6:135336034(-) T-C intron -    22484847
chr6:135336137(-) A-G intron -    22484847
chr6:135336907(-) G-C intron -    22484847
chr6:135348247(-) A-G intron -    22484847
chr6:135348308(-) A-G intron -    22484847
chr6:135349104(-) A-G intron -    22484847
chr6:135349155(-) A-G intron -    22484847
chr6:135353081(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase HBS1L
chr6:135282007-135282008(-) m6A 3'UTR       27773535
chr6:135282049-135282050(-) m6A 3'UTR       27773535
chr6:135282106-135282107(-) m6A 3'UTR       27773535
chr6:135282112-135282113(-) m6A 3'UTR       27773535
chr6:135282168-135282169(-) m6A 3'UTR       27773535
chr6:135282187-135282188(-) m6A 3'UTR       27773535
chr6:135282219-135282220(-) m6A 3'UTR       27773535
chr6:135282263-135282264(-) m6A 3'UTR       27773535
chr6:135282310-135282311(-) m6A 3'UTR       27773535
chr6:135283050-135283051(-) m6A 3'UTR       27773535
chr6:135283095-135283096(-) m6A 3'UTR       27773535
chr6:135283123-135283124(-) m6A 3'UTR       27773535
chr6:135286101-135286102(-) m6A 3'UTR//exon       24981863
chr6:135287536-135287537(-) m6A 3'UTR//CDS//exon       27371828
chr6:135287562-135287563(-) m6A 3'UTR//CDS//exon       27371828
chr6:135287570-135287571(-) m6A 3'UTR//CDS//exon       27371828
chr6:135304383-135304384(-) m6A exon//intron       27773535
chr6:135304404-135304405(-) m6A exon//intron       27773535
chr6:135304482-135304483(-) m6A exon//intron       27773535
chr6:135307305-135307306(-) Y 3'UTR//CDS       26075521
chr6:135314929-135314930(-) m6A 3'UTR//CDS       27773535
chr6:135314975-135314976(-) m6A 3'UTR//CDS       27773535
chr6:135317933-135317934(-) m6A 3'UTR//CDS       27773535
chr6:135317991-135317992(-) m6A 3'UTR//CDS       27773535
chr6:135318008-135318009(-) m6A 3'UTR//CDS       27773535
chr6:135318016-135318017(-) m6A 3'UTR//CDS       27773535
chr6:135318583-135318584(-) m6A CDS//intron       27773535//27371828
chr6:135318702-135318703(-) m6A CDS//intron       27371828
chr6:135318718-135318719(-) Y CDS//intron       26075521
chr6:135357104-135357105(-) m6A 3'UTR//intron       27773535
chr6:135357681-135357682(-) m6A 3'UTR//intron       27773535
chr6:135357801-135357802(-) m6A CDS//intron       24981863//27773535//22608085
chr6:135357821-135357822(-) m6A CDS//intron       24981863//27773535//22608085
chr6:135357838-135357839(-) m6A 3'UTR//CDS//intron       27773535//22608085
chr6:135357917-135357918(-) m6A 3'UTR//CDS//intron       27773535//22608085
chr6:135357937-135357938(-) m6A CDS//intron       27773535//22608085
chr6:135357959-135357960(-) m6A CDS//intron       22608085
chr6:135357984-135357985(-) m6A CDS//intron       22608085
chr6:135358045-135358046(-) m6A CDS//intron       22608085
chr6:135358071-135358072(-) m6A CDS//intron       27773535//22608085
chr6:135358101-135358102(-) m6A CDS//intron       27773535//22608085
chr6:135358437-135358438(-) m6A CDS//intron       22608085
chr6:135358448-135358449(-) m6A CDS//intron       22608085
chr6:135358460-135358461(-) m6A CDS//intron       22608085
chr6:135358535-135358536(-) m6A CDS//intron       22608085
chr6:135358564-135358565(-) m6A CDS//intron       22608085
chr6:135358650-135358651(-) m6A CDS//intron       27773535//22608085
chr6:135358665-135358666(-) m6A CDS//intron       27773535//22608085
chr6:135358738-135358739(-) m6A CDS//intron       27773535//22608085
chr6:135358802-135358803(-) m6A CDS//intron       27773535//22608085
chr6:135358824-135358825(-) m6A CDS//intron       27773535//22608085
chr6:135358851-135358852(-) m6A CDS//intron       27773535//22608085
chr6:135358931-135358932(-) m6A CDS//intron       24981863//27773535//22608085
chr6:135358958-135358959(-) m6A CDS//intron       24981863//27773535//22608085
chr6:135358985-135358986(-) m6A CDS//intron       24981863//27773535//22608085
chr6:135360817-135360818(-) m6A CDS//intron       22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-33b-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
HBS1L
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-33b-3p
Cisplatin 5702198       27559850

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-33b-3p
Interactor2: HBS1L

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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