Detail Information

Basic Information:


  VIRBase ID:  

HHID00067523

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-616-3p:           PSMA2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-616-3p PSMA2
miRBase
Accession/Entrez ID		 MIMAT0004805 5683
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - HC3//MU//PMSA2//PSC2

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-616-3p
rs374321661 chr12:57519192    C/T
rs573303396 chr12:57519190    A/C
rs573303396 chr12:57519190    A/G
rs760442491 chr12:57519183    C/T
rs763282175 chr12:57519193    C/T
rs768469143 chr12:57519184    T/C
rs776483081 chr12:57519185    G/A
rs368928238 chr12:57519199    A/G
rs377525107 chr12:57519198    A/C
rs755336783 chr12:57519200    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PSMA2
chr7:42965909(-) A-I      intronic
chr7:42965090(-) A-I      intronic
chr7:42965088(-) A-I      intronic
chr7:42965083(-) A-I      intronic
chr7:42965075(-) A-I      intronic
chr7:42965062(-) A-I      intronic
chr7:42965950(-) A-I      intronic
chr7:42965074(-) A-I      intronic
chr7:42965922(-) A-I      intronic
chr7:42965046(-) A-I      intronic
chr7:42965908(-) A-I      intronic
chr7:42965853(-) A-I      intronic
chr7:42965845(-) A-I      intronic
chr7:42965132(-) A-I      intronic
chr7:42965055(-) A-I      intronic
chr7:42965056(-) A-I      intronic
chr7:42965127(-) A-I      intronic
chr7:42965060(-) A-I      intronic
chr7:42965126(-) A-I      intronic
chr7:42965125(-) A-I      intronic
chr7:42965113(-) A-I      intronic
chr7:42965104(-) A-I      intronic
chr7:42965953(-) A-I      intronic
chr7:42965065(-) A-I      intronic
chr7:42965069(-) A-I      intronic
chr7:42965102(-) A-I      intronic
chr7:42965096(-) A-I      intronic
chr7:42969991(-) A-I      intronic
chr7:42970070(-) A-I      intronic
chr7:42967504(-) A-I      intronic
chr7:42970146(-) A-I      intronic
chr7:42969996(-) A-I      intronic
chr7:42970046(-) A-I      intronic
chr7:42967474(-) A-I      intronic
chr7:42970382(-) A-I      intronic
chr7:42967442(-) A-I      intronic
chr7:42970039(-) A-I      intronic
chr7:42969997(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PSMA2
chr7:42967474(-) A-I intron -    22327324
chr7:42965867(-) A-I intron -    21960545
chr7:42965869(-) A-I intron -    21960545
chr7:42967474(-) A-G intron -    22484847
chr7:42967517(-) C-T intron -    22484847
chr7:42967519(-) C-T intron -    22484847
chr7:42965066(-) A-G intron -    22484847
chr7:42965099(-) A-G intron -    22484847
chr7:42965155(-) A-G intron -    22484847
chr7:42965918(-) A-G intron -    22484847
chr7:42965952(-) A-G intron -    22484847
chr7:42965954(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PSMA2
chr7:42956513-42956514(-) m6A 3'UTR       27773535
chr7:42956522-42956523(-) m6A 3'UTR       27773535
chr7:42956546-42956547(-) m6A 3'UTR       27773535
chr7:42956560-42956561(-) m6A 3'UTR       27773535
chr7:42956604-42956605(-) m6A 3'UTR       27773535
chr7:42956748-42956749(-) m6A 3'UTR       27773535
chr7:42956767-42956768(-) m6A 3'UTR       27773535
chr7:42956801-42956802(-) m6A 3'UTR       24981863//27773535//22608085
chr7:42956936-42956937(-) m6A 3'UTR       24981863//27773535//22608085
chr7:42957014-42957015(-) m6A 3'UTR       27773535//22575960
chr7:42957022-42957023(-) m6A 3'UTR       27773535//22575960
chr7:42957093-42957094(-) m6A 3'UTR       27773535
chr7:42957104-42957105(-) Y 3'UTR//intron       25219674
chr7:42957122-42957123(-) m6A 3'UTR       24981863//27773535
chr7:42957415-42957416(-) m6A 3'UTR//CDS       27773535
chr7:42960639-42960640(-) m6A 3'UTR//intron       27773535
chr7:42960670-42960671(-) m6A 3'UTR//intron       27773535
chr7:42964371-42964372(-) m6A 3'UTR//CDS       26404942
chr7:42966187-42966188(-) m6A 3'UTR//CDS//intron       26404942
chr7:42966232-42966233(-) m6A 3'UTR//CDS//intron       26404942//22575960
chr7:42967045-42967046(-) m6A 3'UTR//CDS//intron       22575960
chr7:42970714-42970715(-) m6A 3'UTR//intron       22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-616-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
PSMA2
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-616-3p
Interactor2: PSMA2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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