Detail Information

Basic Information:


  VIRBase ID:  

HHID00067515

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-616-3p:           DYNC1LI2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-616-3p DYNC1LI2
miRBase
Accession/Entrez ID		 MIMAT0004805 1783
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - DNCLI2//LIC2

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-616-3p
rs374321661 chr12:57519192    C/T
rs573303396 chr12:57519190    A/C
rs573303396 chr12:57519190    A/G
rs760442491 chr12:57519183    C/T
rs763282175 chr12:57519193    C/T
rs768469143 chr12:57519184    T/C
rs776483081 chr12:57519185    G/A
rs368928238 chr12:57519199    A/G
rs377525107 chr12:57519198    A/C
rs755336783 chr12:57519200    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DYNC1LI2
chr16:66770595(-) A-I      intronic
chr16:66770596(-) A-I      intronic
chr16:66770599(-) A-I      intronic
chr16:66781693(-) A-I      intronic
chr16:66763863(-) A-I      intronic
chr16:66763866(-) A-I      intronic
chr16:66771299(-) A-I      intronic
chr16:66763880(-) A-I      intronic
chr16:66771303(-) A-I      intronic
chr16:66771305(-) A-I      intronic
chr16:66764240(-) A-I      intronic
chr16:66770612(-) A-I      intronic
chr16:66771315(-) A-I      intronic
chr16:66771283(-) A-I      intronic
chr16:66772288(-) A-I      intronic
chr16:66781692(-) A-I      intronic
chr16:66772289(-) A-I      intronic
chr16:66771287(-) A-I      intronic
chr16:66772387(-) A-I      intronic
chr16:66763916(-) A-I      intronic
chr16:66771261(-) A-I      intronic
chr16:66760926(-) A-I      intronic
chr16:66761219(-) A-I      intronic
chr16:66761275(-) A-I      intronic
chr16:66769619(-) A-I      intronic
chr16:66770445(-) A-I      intronic
chr16:66770549(-) A-I      intronic
chr16:66770919(-) A-I      intronic
chr16:66770931(-) A-I      intronic
chr16:66770932(-) A-I      intronic
chr16:66771318(-) A-I      intronic
chr16:66771319(-) A-I      intronic
chr16:66772262(-) A-I      intronic
chr16:66772368(-) A-I      intronic
chr16:66772670(-) A-I      intronic
chr16:66772656(-) A-I      intronic
chr16:66772586(-) A-I      intronic
chr16:66772426(-) A-I      intronic
chr16:66772739(-) A-I      intronic
chr16:66772388(-) A-I      intronic
chr16:66778126(-) A-I      intronic
chr16:66781021(-) A-I      intronic
chr16:66772374(-) A-I      intronic
chr16:66772350(-) A-I      intronic
chr16:66782072(-) A-I      intronic
chr16:66772382(-) A-I      intronic
chr16:66776916(-) A-I      intronic
chr16:66772756(-) A-I      intronic
chr16:66772696(-) A-I      intronic
chr16:66776979(-) A-I      intronic
chr16:66770570(-) A-I      intronic
chr16:66770654(-) A-I      intronic
chr16:66768643(-) A-I      intronic
chr16:66772554(-) A-I      intronic
chr16:66779374(-) A-I      intronic
chr16:66760470(-) A-I      intronic
chr16:66767349(-) A-I      intronic
chr16:66760493(-) A-I      intronic
chr16:66778222(-) A-I      intronic
chr16:66778187(-) A-I      intronic
chr16:66760737(-) A-I      intronic
chr16:66769542(-) A-I      intronic
chr16:66761251(-) A-I      intronic
chr16:66770515(-) A-I      intronic
chr16:66771165(-) A-I      intronic
chr16:66769574(-) A-I      intronic
chr16:66761059(-) A-I      intronic
chr16:66770547(-) A-I      intronic
chr16:66760874(-) A-I      intronic
chr16:66767297(-) A-I      intronic
chr16:66781601(-) A-I      intronic
chr16:66772359(-) A-I      intronic
chr16:66782059(-) A-I      intronic
chr16:66770452(-) A-I      intronic
chr16:66771103(-) A-I      intronic
chr16:66769584(-) A-I      intronic
chr16:66761178(-) A-I      intronic
chr16:66779278(-) A-I      intronic
chr16:66763787(-) A-I      intronic
chr16:66769548(-) A-I      intronic
chr16:66773502(-) A-I      intronic
chr16:66767244(-) A-I      intronic
chr16:66768733(-) A-I      intronic
chr16:66763841(-) A-I      intronic
chr16:66769197(-) A-I      intronic
chr16:66767690(-) A-I      intronic
chr16:66779721(-) A-I      intronic
chr16:66772523(-) A-I      intronic
chr16:66760768(-) A-I      intronic
chr16:66763770(-) A-I      intronic
chr16:66781746(-) A-I      intronic
chr16:66770603(-) A-I      intronic
chr16:66778069(-) A-I      intronic
chr16:66782476(-) A-I      intronic
chr16:66782073(-) A-I      intronic
chr16:66781065(-) A-I      intronic
chr16:66779431(-) A-I      intronic
chr16:66770571(-) A-I      intronic
chr16:66772358(-) A-I      intronic
chr16:66769117(-) A-I      intronic
chr16:66779039(-) A-I      intronic
chr16:66768864(-) A-I      intronic
chr16:66768640(-) A-I      intronic
chr16:66779639(-) A-I      intronic
chr16:66778876(-) A-I      intronic
chr16:66769207(-) A-I      intronic
chr16:66767410(-) A-I      intronic
chr16:66772407(-) A-I      intronic
chr16:66763956(-) A-I      intronic
chr16:66772228(-) A-I      intronic
chr16:66770521(-) A-I      intronic
chr16:66779744(-) A-I      intronic
chr16:66770444(-) A-I      intronic
chr16:66772747(-) A-I      intronic
chr16:66779659(-) A-I      intronic
chr16:66769681(-) A-I      intronic
chr16:66781969(-) A-I      intronic
chr16:66761047(-) A-I      intronic
chr16:66770539(-) A-I      intronic
chr16:66771097(-) A-I      intronic
chr16:66768735(-) A-I      intronic
chr16:66761227(-) A-I      intronic
chr16:66761034(-) A-I      intronic
chr16:66771270(-) A-I      intronic
chr16:66770626(-) A-I      intronic
chr16:66763822(-) A-I      intronic
chr16:66781747(-) A-I      intronic
chr16:66770569(-) A-I      intronic
chr16:66772315(-) A-I      intronic
chr16:66761093(-) A-I      intronic
chr16:66763823(-) A-I      intronic
chr16:66767445(-) A-I      intronic
chr16:66778119(-) A-I      intronic
chr16:66770993(-) A-I      intronic
chr16:66767508(-) A-I      intronic
chr16:66778214(-) A-I      intronic
chr16:66761096(-) A-I      intronic
chr16:66776905(-) A-I      intronic
chr16:66772515(-) A-I      intronic
chr16:66760440(-) A-I      intronic
chr16:66779823(-) A-I      intronic
chr16:66760653(-) A-I      intronic
chr16:66771143(-) A-I      intronic
chr16:66770582(-) A-I      intronic
chr16:66767686(-) A-I      intronic
chr16:66773486(-) A-I      intronic
chr16:66761168(-) A-I      intronic
chr16:66771062(-) A-I      intronic
chr16:66760486(-) A-I      intronic
chr16:66767539(-) A-I      intronic
chr16:66778076(-) A-I      intronic
chr16:66781611(-) A-I      intronic
chr16:66782041(-) A-I      intronic
chr16:66763862(-) A-I      intronic
chr16:66760575(-) A-I      intronic
chr16:66772328(-) A-I      intronic
chr16:66767208(-) A-I      intronic
chr16:66779203(-) A-I      intronic
chr16:66772249(-) A-I      intronic
chr16:66773476(-) A-I      intronic
chr16:66778093(-) A-I      intronic
chr16:66782559(-) A-I      intronic
chr16:66761221(-) A-I      intronic
chr16:66761289(-) A-I      intronic
chr16:66770625(-) A-I      intronic
chr16:66768817(-) A-I      intronic
chr16:66771177(-) A-I      intronic
chr16:66771264(-) A-I      intronic
chr16:66770576(-) A-I      intronic
chr16:66770708(-) A-I      intronic
chr16:66772453(-) A-I      intronic
chr16:66760974(-) A-I      intronic
chr16:66769222(-) A-I      intronic
chr16:66772561(-) A-I      intronic
chr16:66760985(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED DYNC1LI2
chr16:66770539(-) A-G intron -    22484847
chr16:66770547(-) A-G intron -    22484847
chr16:66772358(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DYNC1LI2
chr16:66755570-66755571(-) m6A 3'UTR       26404942
chr16:66756696-66756697(-) m6A 3'UTR       27773535
chr16:66756847-66756848(-) m6A 3'UTR       27773535
chr16:66756918-66756919(-) m6A 3'UTR       27773535
chr16:66757046-66757047(-) m6A 3'UTR       24209618//24981863//26404942//27773535
chr16:66757051-66757052(-) m6A 3'UTR       24209618//24981863//26404942//27773535
chr16:66757170-66757171(-) m6A 3'UTR       24209618//24981863//26404942//27773535
chr16:66757188-66757189(-) m6A 3'UTR       24209618//24981863//26404942//27773535
chr16:66757295-66757296(-) m6A 3'UTR       24209618//24981863//26404942//27773535//27371828//22608085
chr16:66757408-66757409(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr16:66757433-66757434(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr16:66757487-66757488(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr16:66757507-66757508(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr16:66757563-66757564(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr16:66757605-66757606(-) Y 3'UTR//exon//intron       26075521
chr16:66757623-66757624(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr16:66757649-66757650(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr16:66757664-66757665(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr16:66757690-66757691(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr16:66757716-66757717(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr16:66759787-66759788(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535
chr16:66761598-66761599(-) m6A CDS//exon//intron       24284625//24981863//27773535
chr16:66761604-66761605(-) m6A CDS//exon//intron       24284625//27773535
chr16:66761671-66761672(-) m6A CDS//exon//intron       24284625//27773535
chr16:66761690-66761691(-) m6A CDS//exon//intron       24284625//27773535
chr16:66761946-66761947(-) m6A exon//intron       27773535
chr16:66761957-66761958(-) m6A exon//intron       27773535
chr16:66761971-66761972(-) m6A exon//intron       27773535
chr16:66764111-66764112(-) m6A CDS//exon       27773535
chr16:66764125-66764126(-) m6A CDS//exon       27773535
chr16:66764252-66764253(-) m6A exon//intron       27773535
chr16:66764315-66764316(-) m6A exon//intron       24981863//27773535
chr16:66764332-66764333(-) m6A exon//intron       24981863//27773535
chr16:66764347-66764348(-) m6A exon//intron       24981863//27773535
chr16:66764591-66764592(-) m6A exon//intron       27773535
chr16:66764622-66764623(-) m6A exon//intron       24284625//27773535
chr16:66764653-66764654(-) m6A exon//intron       24284625
chr16:66764687-66764688(-) m6A exon//intron       24284625
chr16:66764696-66764697(-) m6A exon//intron       24284625
chr16:66765389-66765390(-) m6A exon//intron       24981863//27773535
chr16:66765411-66765412(-) m6A exon//intron       24981863//27773535
chr16:66765478-66765479(-) m1A exon//intron       26863196
chr16:66765494-66765495(-) m6A exon//intron       24981863//27773535
chr16:66765545-66765546(-) m6A exon//intron       -
chr16:66770118-66770119(-) m6A 3'UTR//CDS//exon       26404942
chr16:66770128-66770129(-) m6A 3'UTR//CDS//exon       26404942
chr16:66776439-66776440(-) m6A 3'UTR//CDS//intron       22608085
chr16:66776446-66776447(-) m6A 3'UTR//CDS//intron       22608085
chr16:66783107-66783108(-) m6A 3'UTR//CDS//intron       26404942
chr16:66783178-66783179(-) m6A 3'UTR//CDS//intron       24284625
chr16:66783195-66783196(-) m6A 3'UTR//CDS//intron       24284625
chr16:66785189-66785190(-) m6A 3'UTR//CDS       24284625//27371828//27773536//22575960
chr16:66785469-66785470(-) m1A CDS       26863196//26863410

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-616-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
DYNC1LI2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-616-3p
Interactor2: DYNC1LI2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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