Detail Information

Basic Information:


  VIRBase ID:  

HHID00067514

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-616-3p:           ZFP36L1:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-616-3p ZFP36L1
miRBase
Accession/Entrez ID		 MIMAT0004805 677
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - Berg36//BRF1//cMG1//ERF-1//ERF1//RNF162B//TIS11B

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-616-3p
rs374321661 chr12:57519192    C/T
rs573303396 chr12:57519190    A/C
rs573303396 chr12:57519190    A/G
rs760442491 chr12:57519183    C/T
rs763282175 chr12:57519193    C/T
rs768469143 chr12:57519184    T/C
rs776483081 chr12:57519185    G/A
rs368928238 chr12:57519199    A/G
rs377525107 chr12:57519198    A/C
rs755336783 chr12:57519200    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZFP36L1
chr14:69258013(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZFP36L1
chr14:69254378-69254379(-) m6A 3'UTR       27773535
chr14:69254396-69254397(-) m6A 3'UTR       27773535
chr14:69254435-69254436(-) m6A 3'UTR       27773535
chr14:69254543-69254544(-) m6A 3'UTR       24284625//24981863//28052920//26404942//27773535//22608085
chr14:69254548-69254549(-) m6A 3'UTR       24284625//24981863//28052920//26404942//27773535//22608085
chr14:69254611-69254612(-) m6A 3'UTR       24284625//24981863//28052920//26404942//27773535//22608085
chr14:69254641-69254642(-) m6A 3'UTR       24284625//24981863//28052920//26404942//27773535//22608085
chr14:69254690-69254691(-) m6A 3'UTR       24284625//25456834//24981863//28052920//26404942//27773535//22608085
chr14:69254733-69254734(-) m6A 3'UTR       24284625//25456834//24981863//28052920//26404942//27773535//22608085
chr14:69254777-69254778(-) m6A 3'UTR       24284625//24981863//28052920//26404942//22608085
chr14:69254820-69254821(-) m6A 3'UTR       24284625//24981863//28052920//26404942//22608085
chr14:69255406-69255407(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr14:69255416-69255417(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr14:69255473-69255474(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr14:69255560-69255561(-) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr14:69255581-69255582(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//27371828
chr14:69255600-69255601(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//27371828
chr14:69255618-69255619(-) m6A 3'UTR//intron       24209618//24981863//27773535//27371828
chr14:69255773-69255774(-) m6A 3'UTR//intron       27773535
chr14:69255780-69255781(-) m6A 3'UTR//intron       27773535
chr14:69255983-69255984(-) m6A 3'UTR//intron       24209618//26404942//27773535
chr14:69256026-69256027(-) m6A 3'UTR//intron       24284625//24209618//24981863//28052920//26404942//27773535
chr14:69256062-69256063(-) m6A 3'UTR//intron       24284625//24209618//24981863//28052920//26404942//27773535
chr14:69256232-69256233(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr14:69256270-69256271(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr14:69256301-69256302(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr14:69256316-69256317(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr14:69256364-69256365(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr14:69256604-69256605(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960
chr14:69256697-69256698(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960
chr14:69256868-69256869(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960
chr14:69257003-69257004(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr14:69257018-69257019(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr14:69257072-69257073(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr14:69257156-69257157(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr14:69257735-69257736(-) m6A CDS//intron       24284625//24209618//25456834//24981863
chr14:69257756-69257757(-) m6A CDS//intron       24284625//24981863
chr14:69257806-69257807(-) m6A CDS//intron       -
chr14:69257863-69257864(-) m6A CDS//intron       -
chr14:69259704-69259705(-) m6A 5'UTR//CDS//intron       24284625//24981863//27371828//22575960
chr14:69259735-69259736(-) m6A 5'UTR//CDS//intron       24284625//24981863//27371828//22575960
chr14:69259742-69259743(-) m6A 5'UTR//CDS//intron       24284625//24981863//27371828
chr14:69259755-69259756(-) m6A 5'UTR//CDS//intron       24284625//24981863//27371828
chr14:69259816-69259817(-) m6A 5'UTR//intron       24284625//24981863//27773535
chr14:69260063-69260064(-) m6A 5'UTR//intron       27773535
chr14:69260206-69260207(-) m6A 5'UTR//intron       25456834//27371828
chr14:69260226-69260227(-) m6A 5'UTR//intron       24209618//25456834//27371828
chr14:69260309-69260310(-) m6A 5'UTR//intron       24209618//25456834
chr14:69260329-69260330(-) m6A 5'UTR//intron       25456834
chr14:69261623-69261624(-) m6A intron       25456834//24981863//27371828//22608085
chr14:69261680-69261681(-) m6A intron       24284625//25456834//24981863//27773535//27371828//22608085
chr14:69261812-69261813(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr14:69261831-69261832(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr14:69261888-69261889(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr14:69261911-69261912(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr14:69261960-69261961(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr14:69261966-69261967(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr14:69261988-69261989(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr14:69262061-69262062(-) m6A intron       24284625//27371828
chr14:69262078-69262079(-) m6A intron       24284625//27371828
chr14:69262178-69262179(-) m6A intron       -
chr14:69262421-69262422(-) m6A intron       25456834//27371828//22608085
chr14:69262449-69262450(-) m6A intron       24284625//25456834//27371828//22608085
chr14:69262468-69262469(-) m6A intron       24284625//25456834//27371828//22608085
chr14:69262559-69262560(-) m6A intron       25456834//27371828
chr14:69262767-69262768(-) m6A 5'UTR//intron       25456834//24981863//27371828//27773536
chr14:69262836-69262837(-) m6A CDS       25456834//27371828
chr14:69262941-69262942(-) m6A 5'UTR       25456834//24981863
chr14:69262946-69262947(-) m6A 5'UTR       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-616-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
ZFP36L1
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HCC cell line (HepG2)     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-616-3p
Interactor2: ZFP36L1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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