Detail Information

Basic Information:


  VIRBase ID:  

HHID00067250

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-582-3p:           YTHDF3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-582-3p YTHDF3
miRBase
Accession/Entrez ID		 MIMAT0004797 253943
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-582-3p
rs1214574538 chr5:59703630    G/A
rs1241555697 chr5:59703637    T/C
rs753131546 chr5:59703642    C/G
rs753131546 chr5:59703642    C/T
rs767280360 chr5:59703651    A/T
rs1186977160 chr5:59703648    G/C
rs763354357 chr5:59703650    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR YTHDF3
chr8:64110954(+) A-I      intronic
chr8:64110935(+) A-I      intronic
chr8:64115149(+) A-I      intronic
chr8:64110925(+) A-I      intronic
chr8:64108919(+) A-I      intronic
chr8:64108627(+) A-I      intronic
chr8:64108489(+) A-I      intronic
chr8:64108459(+) A-I      intronic
chr8:64106922(+) A-I      intronic
chr8:64106912(+) A-I      intronic
chr8:64106855(+) A-I      intronic
chr8:64106832(+) A-I      intronic
chr8:64097541(+) A-I      intronic
chr8:64088968(+) A-I      intronic
chr8:64106923(+) A-I      intronic
chr8:64090446(+) A-I      intronic
chr8:64115710(+) A-I      intronic
chr8:64115703(+) A-I      intronic
chr8:64115694(+) A-I      intronic
chr8:64115671(+) A-I      intronic
chr8:64115661(+) A-I      intronic
chr8:64115713(+) A-I      intronic
chr8:64115733(+) A-I      intronic
chr8:64115526(+) A-I      intronic
chr8:64115100(+) A-I      intronic
chr8:64115081(+) A-I      intronic
chr8:64111034(+) A-I      intronic
chr8:64110964(+) A-I      intronic
chr8:64097600(+) A-I      intronic
chr8:64108955(+) A-I      intronic
chr8:64118882(+) A-I      intronic
chr8:64097646(+) A-I      intronic
chr8:64097630(+) A-I      intronic
chr8:64097610(+) A-I      intronic
chr8:64115201(+) A-I      intronic
chr8:64108865(+) A-I      intronic
chr8:64097622(+) A-I      intronic
chr8:64115669(+) A-I      intronic
chr8:64095596(+) A-I      intronic
chr8:64097606(+) A-I      intronic
chr8:64115242(+) A-I      intronic
chr8:64109000(+) A-I      intronic
chr8:64115742(+) A-I      intronic
chr8:64095595(+) A-I      intronic
chr8:64097476(+) A-I      intronic
chr8:64115177(+) A-I      intronic
chr8:64101115(+) A-I      intronic
chr8:64109035(+) A-I      intronic
chr8:64097517(+) A-I      intronic
chr8:64108549(+) A-I      intronic
chr8:64115075(+) A-I      intronic
chr8:64110926(+) A-I      intronic
chr8:64108499(+) A-I      intronic
chr8:64108540(+) A-I      intronic
chr8:64109026(+) A-I      intronic
chr8:64094756(+) A-I      intronic
chr8:64115590(+) A-I      intronic
chr8:64108453(+) A-I      intronic
chr8:64115146(+) A-I      intronic
chr8:64097551(+) A-I      intronic
chr8:64097533(+) A-I      intronic
chr8:64094697(+) A-I      intronic
chr8:64105878(+) A-I      intronic
chr8:64108826(+) A-I      intronic
chr8:64108472(+) A-I      intronic
chr8:64108389(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED YTHDF3
chr8:64100140(+) A-I exon CDS    19478186
chr8:64090335(+) G-T intron -    22484847
chr8:64090336(+) A-G intron -    22484847
chr8:64095530(+) C-T intron -    22484847
chr8:64095649(+) A-G intron -    22484847
chr8:64097551(+) A-G intron -    22484847
chr8:64097610(+) A-G intron -    22484847
chr8:64108499(+) A-G intron -    22484847
chr8:64108865(+) A-G intron -    22484847
chr8:64110926(+) A-G intron -    22484847
chr8:64115075(+) A-G intron -    22484847
chr8:64115145(+) A-G intron -    22484847
chr8:64115146(+) A-G intron -    22484847
chr8:64115624(+) A-G intron -    22484847
chr8:64115669(+) A-G intron -    22484847
chr8:64115742(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase YTHDF3
chr8:64081182-64081183(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863
chr8:64081208-64081209(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863
chr8:64081339-64081340(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863
chr8:64098810-64098811(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//22575960//22608085
chr8:64098841-64098842(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:64098859-64098860(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:64098980-64098981(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:64098997-64098998(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr8:64099075-64099076(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr8:64099147-64099148(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr8:64099187-64099188(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr8:64099270-64099271(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr8:64099309-64099310(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr8:64099321-64099322(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr8:64099327-64099328(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr8:64099381-64099382(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:64099400-64099401(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:64099463-64099464(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:64099567-64099568(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr8:64099668-64099669(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr8:64099689-64099690(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr8:64099773-64099774(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:64099791-64099792(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:64099981-64099982(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:64100019-64100020(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:64100149-64100150(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:64100169-64100170(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:64101583-64101584(+) m6A exon//intron       24284625//24209618//24981863//22575960//22608085
chr8:64101590-64101591(+) m6A exon//intron       24284625//24209618//24981863//22575960//22608085
chr8:64122253-64122254(+) m6A 3'UTR//CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:64122308-64122309(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:64122378-64122379(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:64122450-64122451(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:64122462-64122463(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:64122552-64122553(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:64123456-64123457(+) Y 3'UTR//exon       25219674

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-582-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
YTHDF3
Chromatin K562 cells     -
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-582-3p
D-Glucose 5793 Drug interaction    RC00007191
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-582-3p
Methyl (9R,10S,11S,12R,19R)-11-acetyloxy-12-ethyl-4-[(13S,15R,17S)-17-ethyl-17-hydroxy-13-methoxycarbonyl-1,11-diazatetracyclo[13.3.1.04,12.05,10]nonadeca-4(12),5,7,9-tetraen-13-yl]-8-formyl-10-hydroxy-5-methoxy-8,16-diazapentacyclo[10.6.1.01,9.02,7.016,19]nonadeca-2,4,6,13-tetraene-10-carboxylate 134755071       26617885

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-582-3p
Interactor2: YTHDF3

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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