Detail Information

Basic Information:


  VIRBase ID:  

HHID00067011

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-513a-3p:           C3orf38:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-513a-3p C3orf38
miRBase
Accession/Entrez ID		 MIMAT0004777 285237
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-513a-3p
rs1193611712 chrX:147213509    A/T
rs1476837748 chrX:147213505    A/G
rs1557097520 chrX:147213503    T/A
rs781863468 chrX:147213501    T/TCACCTTCAC
rs782461607 chrX:147213499    C/G
rs782461607 chrX:147213499    C/T
rs782612905 chrX:147213506    G/C
rs1376206275 chrX:147225882    A/C
rs1557100144 chrX:147225860    C/T
rs1557100149 chrX:147225872    G/A
rs782066339 chrX:147225868    G/C
rs781849357 chrX:147213515    A/C
rs782140998 chrX:147213516    AT/A
rs782514669 chrX:147213517    T/A
rs782794884 chrX:147213518    TTA/T
rs1240793492 chrX:147225877    A/C

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase C3orf38
chr3:88198902-88198903(+) m6A 5'UTR       24981863
chr3:88198955-88198956(+) m6A 5'UTR       24981863
chr3:88198987-88198988(+) m6A 5'UTR       24981863
chr3:88199011-88199012(+) m6A 5'UTR       24981863
chr3:88199216-88199217(+) m6A CDS       24981863
chr3:88202422-88202423(+) m6A CDS//exon       22608085
chr3:88202509-88202510(+) m6A CDS       27773535//22608085
chr3:88202594-88202595(+) m6A CDS       24981863//27773535//22608085
chr3:88202601-88202602(+) m6A CDS       24981863//27773535//22608085
chr3:88205247-88205248(+) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr3:88205277-88205278(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr3:88205298-88205299(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr3:88205352-88205353(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:88205366-88205367(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr3:88205457-88205458(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr3:88205509-88205510(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr3:88205525-88205526(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr3:88205547-88205548(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:88205559-88205560(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:88205647-88205648(+) m6A 3'UTR//CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr3:88205658-88205659(+) m6A 3'UTR//CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr3:88205676-88205677(+) m6A 3'UTR//CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr3:88205767-88205768(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:88205774-88205775(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:88205800-88205801(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:88205810-88205811(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:88205820-88205821(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:88205886-88205887(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:88205968-88205969(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr3:88205975-88205976(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr3:88206090-88206091(+) m6A 3'UTR//exon       24284625//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-513a-3p
Exosome B cell line (Raji)|Jurkat-derived T cell line (J77cl20)     21505438
Exosome Ovarian follicular fluid     22116803
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
C3orf38
Exosome Blood     -

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-513a-3p
Paclitaxel 36314 Drug interaction    RC00007177
cis-Diaminedichloroplatinum 2767 Drug interaction    RC00007176
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-513a-3p
Cisplatin 5702198       22749944
Doxorubicin 31703       25698578

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-513a-3p
Interactor2: C3orf38

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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