Detail Information

Basic Information:


  VIRBase ID:  

HHID00066835

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-500a-5p:           FUBP1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-500a-5p FUBP1
miRBase
Accession/Entrez ID		 MIMAT0004773 8880
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - FBP//FUBP//hDH V

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-500a-5p
rs1221490724 chrX:50008465    A/G
rs1557181893 chrX:50008443    T/G
rs1557181895 chrX:50008452    C/G
rs1557181897 chrX:50008453    T/A
rs1557181900 chrX:50008458    G/A
rs1557181900 chrX:50008458    G/C
rs1557181904 chrX:50008463    A/T
rs369176381 chrX:50008450    T/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR FUBP1
chr1:78417199(-) A-I      intronic
chr1:78439011(-) A-I      intronic
chr1:78438997(-) A-I      intronic
chr1:78438982(-) A-I      intronic
chr1:78438968(-) A-I      intronic
chr1:78419792(-) A-I      intronic
chr1:78419778(-) A-I      intronic
chr1:78417837(-) A-I      intronic
chr1:78417295(-) A-I      intronic
chr1:78415979(-) A-I      intronic
chr1:78419067(-) A-I      intronic
chr1:78419009(-) A-I      intronic
chr1:78439123(-) A-I      intronic
chr1:78419790(-) A-I      intronic
chr1:78419754(-) A-I      intronic
chr1:78436546(-) A-I      intronic
chr1:78436608(-) A-I      intronic
chr1:78438267(-) A-I      intronic
chr1:78438276(-) A-I      intronic
chr1:78438327(-) A-I      intronic
chr1:78438334(-) A-I      intronic
chr1:78439053(-) A-I      intronic
chr1:78439041(-) A-I      intronic
chr1:78439133(-) A-I      intronic
chr1:78439134(-) A-I      intronic
chr1:78440195(-) A-I      intronic
chr1:78438992(-) A-I      intronic
chr1:78415944(-) A-I      intronic
chr1:78415985(-) A-I      intronic
chr1:78415893(-) A-I      intronic
chr1:78438270(-) A-I      intronic
chr1:78439202(-) A-I      intronic
chr1:78436485(-) A-I      intronic
chr1:78438250(-) A-I      intronic
chr1:78418758(-) A-I      intronic
chr1:78439130(-) A-I      intronic
chr1:78438364(-) A-I      intronic
chr1:78436644(-) A-I      intronic
chr1:78438324(-) A-I      intronic
chr1:78439768(-) A-I      intronic
chr1:78439779(-) A-I      intronic
chr1:78439659(-) A-I      intronic
chr1:78415914(-) A-I      intronic
chr1:78419093(-) A-I      intronic
chr1:78418971(-) A-I      intronic
chr1:78418940(-) A-I      intronic
chr1:78438337(-) A-I      intronic
chr1:78439203(-) A-I      intronic
chr1:78419124(-) A-I      intronic
chr1:78419113(-) A-I      intronic
chr1:78417898(-) A-I      intronic
chr1:78439944(-) A-I      intronic
chr1:78419160(-) A-I      intronic
chr1:78417271(-) A-I      intronic
chr1:78436537(-) A-I      intronic
chr1:78439062(-) A-I      intronic
chr1:78416096(-) A-I      intronic
chr1:78436645(-) A-I      intronic
chr1:78418713(-) A-I      intronic
chr1:78418953(-) A-I      intronic
chr1:78438328(-) A-I      intronic
chr1:78438265(-) A-I      intronic
chr1:78438363(-) A-I      intronic
chr1:78418738(-) A-I      intronic
chr1:78417264(-) A-I      intronic
chr1:78416002(-) A-I      intronic
chr1:78417836(-) A-I      intronic
chr1:78439068(-) A-I      intronic
chr1:78416064(-) A-I      intronic
chr1:78442450(-) A-I      intronic
chr1:78436478(-) A-I      intronic
chr1:78438172(-) A-I      intronic
chr1:78419129(-) A-I      intronic
chr1:78419068(-) A-I      intronic
chr1:78419784(-) A-I      intronic
chr1:78415970(-) A-I      intronic
chr1:78436566(-) A-I      intronic
chr1:78439038(-) A-I      intronic
chr1:78442274(-) A-I      intronic
chr1:78439094(-) A-I      intronic
chr1:78438245(-) A-I      intronic
chr1:78438253(-) A-I      intronic
chr1:78436484(-) A-I      intronic
chr1:78442240(-) A-I      intronic
chr1:78418721(-) A-I      intronic
chr1:78418972(-) A-I      intronic
chr1:78442287(-) A-I      intronic
chr1:78442316(-) A-I      intronic
chr1:78419114(-) A-I      intronic
chr1:78418982(-) A-I      intronic
chr1:78423701(-) A-I      intronic
chr1:78437603(-) A-I      intronic
chr1:78416095(-) A-I      intronic
chr1:78416091(-) A-I      intronic
chr1:78415949(-) A-I      intronic
chr1:78419762(-) A-I      intronic
chr1:78439067(-) A-I      intronic
chr1:78442468(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED FUBP1
chr1:78415906(-) A-I intron -    22327324
chr1:78416096(-) A-I intron -    22327324
chr1:78416002(-) A-I intron -    21960545
chr1:78415944(-) A-G intron -    22484847
chr1:78415949(-) A-G intron -    22484847
chr1:78415970(-) A-G intron -    22484847
chr1:78416002(-) A-G intron -    22484847
chr1:78416064(-) A-G intron -    22484847
chr1:78416095(-) A-G intron -    22484847
chr1:78416096(-) A-G intron -    22484847
chr1:78417264(-) A-G intron -    22484847
chr1:78417273(-) C-T intron -    22484847
chr1:78417936(-) A-T intron -    22484847
chr1:78418721(-) A-G intron -    22484847
chr1:78418738(-) A-G intron -    22484847
chr1:78418940(-) A-G intron -    22484847
chr1:78418953(-) A-G intron -    22484847
chr1:78418972(-) A-G intron -    22484847
chr1:78418982(-) A-G intron -    22484847
chr1:78419068(-) A-G intron -    22484847
chr1:78419093(-) A-G intron -    22484847
chr1:78419114(-) A-G intron -    22484847
chr1:78419124(-) A-G intron -    22484847
chr1:78419160(-) A-G intron -    22484847
chr1:78436478(-) A-G intron -    22484847
chr1:78436644(-) A-G intron -    22484847
chr1:78436645(-) A-G intron -    22484847
chr1:78437600(-) T-C intron -    22484847
chr1:78437603(-) A-G intron -    22484847
chr1:78438245(-) A-G intron -    22484847
chr1:78438250(-) A-G intron -    22484847
chr1:78438253(-) A-G intron -    22484847
chr1:78438265(-) A-G intron -    22484847
chr1:78438270(-) A-G intron -    22484847
chr1:78438324(-) A-G intron -    22484847
chr1:78438328(-) A-G intron -    22484847
chr1:78438337(-) A-G intron -    22484847
chr1:78438364(-) A-G intron -    22484847
chr1:78439062(-) A-G intron -    22484847
chr1:78439067(-) A-G intron -    22484847
chr1:78439068(-) A-G intron -    22484847
chr1:78439094(-) A-G intron -    22484847
chr1:78439130(-) A-G intron -    22484847
chr1:78439202(-) A-G intron -    22484847
chr1:78439203(-) A-G intron -    22484847
chr1:78439838(-) C-A intron -    22484847
chr1:78439944(-) A-G intron -    22484847
chr1:78442316(-) A-G intron -    22484847
chr1:78443083(-) C-T intron -    22484847
chr1:78443132(-) C-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase FUBP1
chr1:78409873-78409874(-) m6A exon       27773535
chr1:78409900-78409901(-) m6A exon       27773535
chr1:78414402-78414403(-) m6A 3'UTR//intron       27773535
chr1:78414439-78414440(-) m6A 3'UTR//intron       27773535
chr1:78422260-78422261(-) m6A CDS//exon       27773535
chr1:78422268-78422269(-) m6A CDS//exon       27773535
chr1:78426048-78426049(-) m6A CDS//exon       27773535//22575960
chr1:78426078-78426079(-) m6A CDS//exon       27773535
chr1:78426089-78426090(-) m6A CDS//exon       27773535
chr1:78426153-78426154(-) Y CDS//exon       25219674
chr1:78428462-78428463(-) Am CDS       -
chr1:78428488-78428489(-) m6A CDS       26404942
chr1:78428565-78428566(-) m6A CDS       24981863//26404942
chr1:78428606-78428607(-) m6A CDS       24981863//26404942
chr1:78429279-78429280(-) m6A CDS       26404942//22575960
chr1:78429316-78429317(-) m6A CDS       22575960
chr1:78429328-78429329(-) m6A CDS       22575960
chr1:78429335-78429336(-) m6A CDS       22575960
chr1:78429376-78429377(-) m6A CDS       22575960
chr1:78429382-78429383(-) m6A CDS       22575960
chr1:78429765-78429766(-) m6A CDS       22575960
chr1:78429798-78429799(-) m6A CDS       24981863//22575960
chr1:78429806-78429807(-) m6A CDS       24981863//22575960
chr1:78429838-78429839(-) m6A CDS       24981863//22575960
chr1:78430570-78430571(-) m6A CDS       24981863//26404942//22575960
chr1:78430590-78430591(-) m6A CDS       24981863//26404942//27773535//22575960
chr1:78430606-78430607(-) m6A CDS       24981863//26404942//27773535//22575960
chr1:78430761-78430762(-) m6A CDS       24981863//27773535
chr1:78430769-78430770(-) m6A CDS       24981863//27773535
chr1:78430842-78430843(-) m6A CDS       27773535
chr1:78430872-78430873(-) m6A CDS       27773535
chr1:78430894-78430895(-) m6A CDS       27773535
chr1:78434756-78434757(-) m6A CDS//intron       24981863
chr1:78435624-78435625(-) m6A CDS       24981863
chr1:78435633-78435634(-) m6A CDS       24981863//27773535
chr1:78435668-78435669(-) m6A CDS       24284625//24981863//27773535//22575960
chr1:78444680-78444681(-) m6A CDS       24284625//24981863//27773535//22575960
chr1:78444717-78444718(-) m6A 5'UTR       24284625//24981863//27773535//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-500a-5p
Exosome Primary dendritic cells     21505438
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Skeletal muscle myoblasts     21637849
Nucleus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
FUBP1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-500a-5p
Interactor2: FUBP1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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