Detail Information

Basic Information:


  VIRBase ID:  

HHID00066548

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-342-5p TNRC18P2
miRBase
Accession/Entrez ID		 MIMAT0004694 27320
Organism Homo sapiens Homo sapiens
Category miRNA pseudo
Alias - TNRC18//TNRC18B

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-342-5p
rs1314257099 chr14:100109686    G/A
rs1393913344 chr14:100109691    T/G
rs1416401513 chr14:100109682    A/G
rs1440243721 chr14:100109690    T/C
rs1171193472 chr14:100109674    G/A
rs1171193472 chr14:100109674    G/C
rs1258216912 chr14:100109676    G/T
rs1434812614 chr14:100109677    G/A
rs752423769 chr14:100109675    G/A

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-342-5p
Exosome Primary dendritic cells     21505438
Exosome Plasma     23663360
Exosome Plasma|Serum     24683445
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Cell line (HEK-293|HeLa)     22984580
TNRC18P2
Exosome Blood     -

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-342-5p
D-Glucose 5793 Drug interaction    RC00007084
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-342-5p
Etoposide 36462       23028896

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-342-5p
Interactor2: TNRC18P2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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