Detail Information

Basic Information:


  VIRBase ID:  

HHID00066255

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-26a-2-3p:           GNPNAT1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-26a-2-3p GNPNAT1
miRBase
Accession/Entrez ID		 MIMAT0004681 64841
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - GNA1//GNPNAT//Gpnat1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-26a-2-3p
rs1158238029 chr12:57824632    C/G
rs1386005710 chr12:57824636    A/G
rs1386005710 chr12:57824636    A/T
rs768371795 chr12:57824638    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR GNPNAT1
chr14:53243422(-) A-I      3'UTR
chr14:53242407(-) A-I      3'UTR
chr14:53253060(-) A-I      intronic
chr14:53253057(-) A-I      intronic
chr14:53252706(-) A-I      intronic
chr14:53253090(-) A-I      intronic
chr14:53243603(-) A-I      3'UTR
chr14:53243562(-) A-I      3'UTR
chr14:53253170(-) A-I      intronic
chr14:53253188(-) A-I      intronic
chr14:53252224(-) A-I      intronic
chr14:53253139(-) A-I      intronic
chr14:53252432(-) A-I      intronic
chr14:53253153(-) A-I      intronic
chr14:53251757(-) A-I      intronic
chr14:53252404(-) A-I      intronic
chr14:53252258(-) A-I      intronic
chr14:53252390(-) A-I      intronic
chr14:53252249(-) A-I      intronic
chr14:53253066(-) A-I      intronic
chr14:53253082(-) A-I      intronic
chr14:53253100(-) A-I      intronic
chr14:53253110(-) A-I      intronic
chr14:53253122(-) A-I      intronic
chr14:53243394(-) A-I      3'UTR
chr14:53242746(-) A-I      3'UTR
chr14:53242476(-) A-I      3'UTR
chr14:53243515(-) A-I      3'UTR
chr14:53242882(-) A-I      3'UTR
chr14:53242652(-) A-I      3'UTR
chr14:53243491(-) A-I      3'UTR
chr14:53242857(-) A-I      3'UTR
chr14:53242398(-) A-I      3'UTR
chr14:53243468(-) A-I      3'UTR
chr14:53243297(-) A-I      3'UTR
chr14:53243357(-) A-I      3'UTR
chr14:53243477(-) A-I      3'UTR
chr14:53243384(-) A-I      3'UTR
chr14:53242582(-) A-I      3'UTR
chr14:53242481(-) A-I      3'UTR
chr14:53243341(-) A-I      3'UTR
chr14:53243326(-) A-I      3'UTR
chr14:53243389(-) A-I      3'UTR
chr14:53242637(-) A-I      3'UTR
chr14:53243478(-) A-I      3'UTR
chr14:53242460(-) A-I      3'UTR
chr14:53242427(-) A-I      3'UTR
chr14:53242425(-) A-I      3'UTR
chr14:53243537(-) A-I      3'UTR
chr14:53242417(-) A-I      3'UTR
chr14:53243334(-) A-I      3'UTR
chr14:53243546(-) A-I      3'UTR
chr14:53242354(-) A-I      3'UTR
chr14:53243411(-) A-I      3'UTR
chr14:53243434(-) A-I      3'UTR
chr14:53242406(-) A-I      3'UTR
chr14:53242651(-) A-I      3'UTR
chr14:53242881(-) A-I      3'UTR
chr14:53243488(-) A-I      3'UTR
chr14:53242488(-) A-I      3'UTR
chr14:53243382(-) A-I      3'UTR
chr14:53254954(-) A-I      intronic
chr14:53251749(-) A-I      intronic
chr14:53255125(-) A-I      intronic
chr14:53246723(-) A-I      intronic
chr14:53254869(-) A-I      intronic
chr14:53252742(-) A-I      intronic
chr14:53252696(-) A-I      intronic
chr14:53252663(-) A-I      intronic
chr14:53253051(-) A-I      intronic
chr14:53255079(-) A-I      intronic
chr14:53252329(-) A-I      intronic
chr14:53252184(-) A-I      intronic
chr14:53253040(-) A-I      intronic
chr14:53254959(-) A-I      intronic
chr14:53252692(-) A-I      intronic
chr14:53252978(-) A-I      intronic
chr14:53252397(-) A-I      intronic
chr14:53253160(-) A-I      intronic
chr14:53252391(-) A-I      intronic
chr14:53251784(-) A-I      intronic
chr14:53251768(-) A-I      intronic
chr14:53252682(-) A-I      intronic
chr14:53252662(-) A-I      intronic
chr14:53251849(-) A-I      intronic
chr14:53251729(-) A-I      intronic
chr14:53252396(-) A-I      intronic
chr14:53243507(-) A-I      3'UTR
chr14:53242418(-) A-I      3'UTR
chr14:53242549(-) A-I      3'UTR
chr14:53242674(-) A-I      3'UTR
chr14:53243438(-) A-I      3'UTR
chr14:53242518(-) A-I      3'UTR
chr14:53242630(-) A-I      3'UTR
chr14:53243554(-) A-I      3'UTR
chr14:53243370(-) A-I      3'UTR
chr14:53242568(-) A-I      3'UTR
chr14:53242678(-) A-I      3'UTR
chr14:53242782(-) A-I      3'UTR
chr14:53243398(-) A-I      3'UTR
chr14:53242482(-) A-I      3'UTR
chr14:53242806(-) A-I      3'UTR
chr14:53242491(-) A-I      3'UTR
chr14:53243223(-) A-I      3'UTR
chr14:53242405(-) A-I      3'UTR
chr14:53242392(-) A-I      3'UTR
chr14:53243412(-) A-I      3'UTR
chr14:53242768(-) A-I      3'UTR
chr14:53242639(-) A-I      3'UTR
chr14:53242766(-) A-I      3'UTR
chr14:53242790(-) A-I      3'UTR
chr14:53242795(-) A-I      3'UTR
chr14:53242500(-) A-I      3'UTR
chr14:53243442(-) A-I      3'UTR
chr14:53242544(-) A-I      3'UTR
chr14:53242833(-) A-I      3'UTR
chr14:53242376(-) A-I      3'UTR
chr14:53242685(-) A-I      3'UTR
chr14:53243402(-) A-I      3'UTR
chr14:53242519(-) A-I      3'UTR
chr14:53242478(-) A-I      3'UTR
chr14:53242364(-) A-I      3'UTR
chr14:53243540(-) A-I      3'UTR
chr14:53243502(-) A-I      3'UTR
chr14:53242859(-) A-I      3'UTR
chr14:53242430(-) A-I      3'UTR
chr14:53243545(-) A-I      3'UTR
chr14:53245018(-) A-I      3'UTR
chr14:53243406(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED GNPNAT1
chr14:53242354(-) A-I exon 3'UTR    15342557   //22327324
chr14:53242430(-) A-I exon 3'UTR    15342557
chr14:53242478(-) A-I exon 3'UTR    15342557   //22327324
chr14:53242518(-) A-I exon 3'UTR    15342557   //22327324
chr14:53243223(-) A-I exon 3'UTR    15342557
chr14:53243394(-) A-I exon 3'UTR    15342557   //15258596   //21960545
chr14:53243406(-) A-I exon 3'UTR    15342557   //15258596
chr14:53243412(-) A-I exon 3'UTR    15342557   //15258596   //22327324
chr14:53243488(-) A-I exon 3'UTR    15342557
chr14:53243546(-) A-I exon 3'UTR    15342557
chr14:53245018(-) A-I exon 3'UTR    15342557
chr14:53242417(-) A-I exon 3'UTR    22327324
chr14:53242425(-) A-I exon 3'UTR    22327324
chr14:53242568(-) A-I exon 3'UTR    22327324
chr14:53242859(-) A-I exon 3'UTR    21960545   //22327324
chr14:53242746(-) A-I exon 3'UTR    21960545
chr14:53242857(-) A-I exon 3'UTR    21960545
chr14:53242478(-) A-G exon 3'UTR    21725310   //22484847
chr14:53242859(-) A-G exon 3'UTR    21725310   //22484847
chr14:53243545(-) A-G exon 3'UTR    21725310   //22484847
chr14:53242354(-) A-G exon 3'UTR    22484847
chr14:53242417(-) A-G exon 3'UTR    22484847
chr14:53242418(-) A-G exon 3'UTR    22484847
chr14:53242425(-) A-G exon 3'UTR    22484847
chr14:53242488(-) A-G exon 3'UTR    22484847
chr14:53242500(-) A-G exon 3'UTR    22484847
chr14:53242518(-) A-G exon 3'UTR    22484847
chr14:53242519(-) A-G exon 3'UTR    22484847
chr14:53242568(-) A-G exon 3'UTR    22484847
chr14:53242639(-) A-G exon 3'UTR    22484847
chr14:53242646(-) T-C exon 3'UTR    22484847
chr14:53242651(-) A-G exon 3'UTR    22484847
chr14:53242674(-) A-G exon 3'UTR    22484847
chr14:53242833(-) A-G exon 3'UTR    22484847
chr14:53243394(-) A-G exon 3'UTR    22484847
chr14:53243402(-) A-G exon 3'UTR    22484847
chr14:53243406(-) A-G exon 3'UTR    22484847
chr14:53243411(-) A-G exon 3'UTR    22484847
chr14:53243412(-) A-G exon 3'UTR    22484847
chr14:53243434(-) A-G exon 3'UTR    22484847
chr14:53243438(-) A-G exon 3'UTR    22484847
chr14:53243488(-) A-G exon 3'UTR    22484847
chr14:53243546(-) A-G exon 3'UTR    22484847
chr14:53243554(-) A-G exon 3'UTR    22484847
chr14:53246264(-) T-C intron -    22484847
chr14:53254993(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GNPNAT1
chr14:53242404-53242405(-) m6A 3'UTR       27773535
chr14:53242480-53242481(-) m6A 3'UTR       27773535
chr14:53242596-53242597(-) m6A 3'UTR//exon       27773535
chr14:53243467-53243468(-) m6A 3'UTR//intron       27773535
chr14:53243490-53243491(-) m6A 3'UTR//intron       27773535
chr14:53243705-53243706(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535//22608085
chr14:53243766-53243767(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535//22608085
chr14:53244858-53244859(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr14:53244913-53244914(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr14:53244922-53244923(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr14:53245056-53245057(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr14:53245137-53245138(-) m6A CDS       24209618//24981863//27773535//22608085
chr14:53245142-53245143(-) m6A CDS       24209618//24981863//22608085
chr14:53248474-53248475(-) m6A exon//intron       24209618//24981863
chr14:53251315-53251316(-) m6A CDS//intron       24284625//24981863
chr14:53251352-53251353(-) m6A CDS//intron       24284625//24981863
chr14:53251362-53251363(-) m6A CDS//intron       24284625//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-26a-2-3p
Exosome Plasma     23663360
Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326
Exosome Breast milk     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
GNPNAT1
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HeLa-S3 cells|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-26a-2-3p
Interactor2: GNPNAT1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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