Detail Information

Basic Information:


  VIRBase ID:  

HHID00066253

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-26a-2-3p:           CREBZF:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-26a-2-3p CREBZF
miRBase
Accession/Entrez ID		 MIMAT0004681 58487
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - SMILE//ZF

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-26a-2-3p
rs1158238029 chr12:57824632    C/G
rs1386005710 chr12:57824636    A/G
rs1386005710 chr12:57824636    A/T
rs768371795 chr12:57824638    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CREBZF
chr11:85371357(-) A-I      3'UTR
chr11:85378838(-) A-I      intronic
chr11:85378310(-) A-I      intronic
chr11:85381512(-) A-I      intronic
chr11:85381061(-) A-I      intronic
chr11:85378836(-) A-I      intronic
chr11:85378822(-) A-I      intronic
chr11:85378839(-) A-I      intronic
chr11:85378390(-) A-I      intronic
chr11:85378389(-) A-I      intronic
chr11:85378892(-) A-I      intronic
chr11:85378757(-) A-I      intronic
chr11:85387846(-) A-I      intronic
chr11:85387938(-) A-I      intronic
chr11:85378745(-) A-I      intronic
chr11:85378320(-) A-I      intronic
chr11:85381617(-) A-I      intronic
chr11:85378784(-) A-I      intronic
chr11:85381123(-) A-I      intronic
chr11:85387753(-) A-I      intronic
chr11:85381515(-) A-I      intronic
chr11:85381016(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CREBZF
chr11:85370760-85370761(-) m6A 3'UTR       27773535
chr11:85370851-85370852(-) m6A 3'UTR       27773535
chr11:85371102-85371103(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr11:85371149-85371150(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr11:85371174-85371175(-) m6A 3'UTR       24284625//24981863//28052920//27773535//22608085
chr11:85371239-85371240(-) m6A 3'UTR//exon       24284625//24981863//28052920//27773535//22608085
chr11:85371393-85371394(-) m6A 3'UTR//exon       24209618//24981863//27773535//22608085
chr11:85371410-85371411(-) m6A 3'UTR//exon       24209618//24981863//27773535//22608085
chr11:85371430-85371431(-) m6A 3'UTR//exon       24209618//24981863//27773535//22608085
chr11:85371560-85371561(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr11:85371587-85371588(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr11:85371644-85371645(-) m6A 3'UTR//intron       24284625//24981863//26404942//27773535//22608085
chr11:85371978-85371979(-) m6A 3'UTR//intron       24981863
chr11:85372109-85372110(-) m6A 3'UTR//intron       24981863
chr11:85372814-85372815(-) m6A 3'UTR//intron       27773535
chr11:85372885-85372886(-) m6A 3'UTR//intron       27773535
chr11:85372921-85372922(-) m6A 3'UTR//intron       27773535
chr11:85374225-85374226(-) m6A 3'UTR//intron       27773535
chr11:85374233-85374234(-) m6A 3'UTR//intron       27773535
chr11:85374244-85374245(-) m6A 3'UTR//intron       27773535
chr11:85374260-85374261(-) m6A 3'UTR//intron       27773535
chr11:85374300-85374301(-) m6A 3'UTR//intron       27773535
chr11:85374336-85374337(-) m6A 3'UTR//intron       27773535
chr11:85374414-85374415(-) m6A 3'UTR//intron       27773535
chr11:85374591-85374592(-) m6A 3'UTR//CDS//exon       24284625//27773535//22608085
chr11:85374765-85374766(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr11:85374778-85374779(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr11:85374793-85374794(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr11:85374924-85374925(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:85374972-85374973(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:85375026-85375027(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:85375055-85375056(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:85375091-85375092(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:85375096-85375097(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:85375191-85375192(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:85375246-85375247(-) m1A CDS//intron       26863196
chr11:85375557-85375558(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:85375569-85375570(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:85375584-85375585(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:85375601-85375602(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:85375620-85375621(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:85376041-85376042(-) m6A 5'UTR//intron       24284625//24981863//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-26a-2-3p
Exosome Plasma     23663360
Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326
Exosome Breast milk     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
CREBZF
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-26a-2-3p
Interactor2: CREBZF

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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