Detail Information

Basic Information:


  VIRBase ID:  

HHID00066059

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-194-3p:           TSC22D3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-194-3p TSC22D3
miRBase
Accession/Entrez ID		 MIMAT0004671 1831
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - DIP//DSIPI//GILZ//TSC-22R

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-194-3p
rs1163841393 chr11:64891375    C/T
rs1385637052 chr11:64891389    G/A
rs772002778 chr11:64891380    G/T
rs936633098 chr11:64891370    G/A
rs1162071131 chr11:64891384    C/A
rs777631483 chr11:64891382    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TSC22D3
chrX:107006255(-) A-I      intronic
chrX:107006251(-) A-I      intronic
chrX:107001136(-) A-I      intronic
chrX:107006195(-) A-I      intronic
chrX:107001209(-) A-I      intronic
chrX:107002207(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TSC22D3
chrX:106957269-106957270(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chrX:106957375-106957376(-) m6A 3'UTR       24284625//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chrX:106957577-106957578(-) m6A 3'UTR       24284625//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chrX:106957608-106957609(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chrX:106957650-106957651(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chrX:106957713-106957714(-) m6A 3'UTR       24284625//24981863//28052920//27773535//22575960//22608085
chrX:106957858-106957859(-) m6A CDS       24284625//24981863//27773535//27371828//27773536
chrX:106957872-106957873(-) m6A CDS       24284625//24981863//27773535//27371828//27773536
chrX:106957893-106957894(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//27773536
chrX:106957918-106957919(-) Cm CDS       -
chrX:106959027-106959028(-) m6A CDS//intron       24981863//28052920//27773535//27371828//27773536
chrX:106959137-106959138(-) m6A 5'UTR//CDS       24981863
chrX:106959150-106959151(-) m6A 5'UTR//CDS       24981863
chrX:106959220-106959221(-) m6A 5'UTR//intron       24981863
chrX:106959255-106959256(-) m6A 5'UTR//intron       25456834//24981863//27773536
chrX:106959312-106959313(-) m6A 5'UTR//intron       25456834//24981863//27371828//27773536//22608085
chrX:106959326-106959327(-) m6A 5'UTR//intron       25456834//24981863//27371828//27773536//22608085
chrX:106959407-106959408(-) m6A 5'UTR//intron       27773536//22608085
chrX:106959434-106959435(-) m6A 5'UTR//intron       27773536
chrX:106959505-106959506(-) m6A 5'UTR//intron       27773536
chrX:106959528-106959529(-) m6A 5'UTR//intron       27773536
chrX:106959643-106959644(-) m6A 5'UTR//intron       25456834//27773536
chrX:106959648-106959649(-) m6A 5'UTR//intron       25456834//27773536
chrX:106959700-106959701(-) m6A 5'UTR//intron       27773536
chrX:106960019-106960020(-) m6A CDS//intron       24981863//28052920//27371828//27773536
chrX:106960036-106960037(-) m6A CDS//intron       24981863//28052920//27371828//27773536
chrX:106960071-106960072(-) m6A 5'UTR//intron       24981863//27371828//27773536
chrX:106960146-106960147(-) m6A 5'UTR//intron       24981863//27371828//27773536
chrX:106960278-106960279(-) m6A 5'UTR//intron       27371828//27773536
chrX:107018473-107018474(-) m6A 5'UTR//CDS       27773536//22608085
chrX:107018539-107018540(-) m6A CDS//intron       27371828//27773536//22608085
chrX:107018584-107018585(-) m6A CDS//intron       27371828//27773536//22608085
chrX:107018970-107018971(-) m6A 5'UTR//intron       24284625//27773536
chrX:107018977-107018978(-) m6A 5'UTR//intron       27773536
chrX:107019098-107019099(-) m6A 5'UTR//intron       27773536
chrX:107019184-107019185(-) m6A 5'UTR//intron       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-194-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
TSC22D3
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-194-3p
Interactor2: TSC22D3

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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