Detail Information

Basic Information:


  VIRBase ID:  

HHID00065980

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-138-1-3p:           ELK4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-138-1-3p ELK4
miRBase
Accession/Entrez ID		 MIMAT0004607 2005
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - SAP1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-138-1-3p
rs1215016527 chr3:44114288    C/T
rs759234321 chr3:44114292    G/A
rs759234321 chr3:44114292    G/C
rs770499543 chr3:44114276    T/C
rs773680447 chr3:44114278    C/A
rs892673276 chr3:44114281    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ELK4
chr1:205587363(-) A-I      intronic
chr1:205587322(-) A-I      intronic
chr1:205587321(-) A-I      intronic
chr1:205592505(-) A-I      intronic
chr1:205592490(-) A-I      intronic
chr1:205587357(-) A-I      intronic
chr1:205587358(-) A-I      intronic
chr1:205592506(-) A-I      intronic
chr1:205573876(-) A-I      intronic
chr1:205587362(-) A-I      intronic
chr1:205592680(-) A-I      intronic
chr1:205592510(-) A-I      intronic
chr1:205586795(-) A-I      intronic
chr1:205587214(-) A-I      intronic
chr1:205590211(-) A-I      intronic
chr1:205576683(-) A-I      intronic
chr1:205590143(-) A-I      intronic
chr1:205576142(-) A-I      intronic
chr1:205595078(-) A-I      intronic
chr1:205594989(-) A-I      intronic
chr1:205594947(-) A-I      intronic
chr1:205587868(-) A-I      intronic
chr1:205592650(-) A-I      intronic
chr1:205592637(-) A-I      intronic
chr1:205592636(-) A-I      intronic
chr1:205574667(-) A-I      intronic
chr1:205592618(-) A-I      intronic
chr1:205576183(-) A-I      intronic
chr1:205576185(-) A-I      intronic
chr1:205592199(-) A-I      intronic
chr1:205592177(-) A-I      intronic
chr1:205592044(-) A-I      intronic
chr1:205587426(-) A-I      intronic
chr1:205576300(-) A-I      intronic
chr1:205576302(-) A-I      intronic
chr1:205591749(-) A-I      intronic
chr1:205591725(-) A-I      intronic
chr1:205576542(-) A-I      intronic
chr1:205590080(-) A-I      intronic
chr1:205576562(-) A-I      intronic
chr1:205591711(-) A-I      intronic
chr1:205591306(-) A-I      intronic
chr1:205576640(-) A-I      intronic
chr1:205576051(-) A-I      intronic
chr1:205587934(-) A-I      intronic
chr1:205576692(-) A-I      intronic
chr1:205591220(-) A-I      intronic
chr1:205587875(-) A-I      intronic
chr1:205575591(-) A-I      intronic
chr1:205591202(-) A-I      intronic
chr1:205575566(-) A-I      intronic
chr1:205575562(-) A-I      intronic
chr1:205575560(-) A-I      intronic
chr1:205575550(-) A-I      intronic
chr1:205575518(-) A-I      intronic
chr1:205575478(-) A-I      intronic
chr1:205575590(-) A-I      intronic
chr1:205587760(-) A-I      intronic
chr1:205591194(-) A-I      intronic
chr1:205573985(-) A-I      intronic
chr1:205582395(-) A-I      3'UTR
chr1:205586773(-) A-I      intronic
chr1:205591176(-) A-I      intronic
chr1:205575069(-) A-I      intronic
chr1:205595086(-) A-I      intronic
chr1:205587246(-) A-I      intronic
chr1:205592203(-) A-I      intronic
chr1:205573922(-) A-I      intronic
chr1:205591153(-) A-I      intronic
chr1:205591619(-) A-I      intronic
chr1:205591242(-) A-I      intronic
chr1:205591290(-) A-I      intronic
chr1:205590785(-) A-I      intronic
chr1:205587338(-) A-I      intronic
chr1:205592021(-) A-I      intronic
chr1:205592575(-) A-I      intronic
chr1:205586946(-) A-I      intronic
chr1:205591266(-) A-I      intronic
chr1:205572961(-) A-I      intronic
chr1:205590068(-) A-I      intronic
chr1:205591665(-) A-I      intronic
chr1:205591083(-) A-I      intronic
chr1:205587325(-) A-I      intronic
chr1:205591659(-) A-I      intronic
chr1:205592562(-) A-I      intronic
chr1:205587328(-) A-I      intronic
chr1:205574974(-) A-I      intronic
chr1:205592073(-) A-I      intronic
chr1:205576435(-) A-I      intronic
chr1:205592651(-) A-I      intronic
chr1:205587308(-) A-I      intronic
chr1:205566783(-) A-I      3'UTR
chr1:205591736(-) A-I      intronic
chr1:205572964(-) A-I      intronic
chr1:205587386(-) A-I      intronic
chr1:205574825(-) A-I      intronic
chr1:205586995(-) A-I      intronic
chr1:205596448(-) A-I      intronic
chr1:205591259(-) A-I      intronic
chr1:205574895(-) A-I      intronic
chr1:205592204(-) A-I      intronic
chr1:205592022(-) A-I      intronic
chr1:205573976(-) A-I      intronic
chr1:205576664(-) A-I      intronic
chr1:205572944(-) A-I      intronic
chr1:205587282(-) A-I      intronic
chr1:205591646(-) A-I      intronic
chr1:205591715(-) A-I      intronic
chr1:205576572(-) A-I      intronic
chr1:205590740(-) A-I      intronic
chr1:205576517(-) A-I      intronic
chr1:205590201(-) A-I      intronic
chr1:205574681(-) A-I      intronic
chr1:205592442(-) A-I      intronic
chr1:205592061(-) A-I      intronic
chr1:205576452(-) A-I      intronic
chr1:205591620(-) A-I      intronic
chr1:205566756(-) A-I      3'UTR
chr1:205576598(-) A-I      intronic
chr1:205590120(-) A-I      intronic
chr1:205592449(-) A-I      intronic
chr1:205591193(-) A-I      intronic
chr1:205576601(-) A-I      intronic
chr1:205592074(-) A-I      intronic
chr1:205592049(-) A-I      intronic
chr1:205595077(-) A-I      intronic
chr1:205566773(-) A-I      3'UTR
chr1:205575448(-) A-I      intronic
chr1:205576063(-) A-I      intronic
chr1:205586998(-) A-I      intronic
chr1:205590240(-) A-I      intronic
chr1:205591613(-) A-I      intronic
chr1:205574644(-) A-I      intronic
chr1:205590131(-) A-I      intronic
chr1:205587187(-) A-I      intronic
chr1:205591185(-) A-I      intronic
chr1:205587722(-) A-I      intronic
chr1:205590788(-) A-I      intronic
chr1:205592247(-) A-I      intronic
chr1:205575482(-) A-I      intronic
chr1:205599014(-) A-I      intronic
chr1:205592164(-) A-I      intronic
chr1:205592178(-) A-I      intronic
chr1:205576548(-) A-I      intronic
chr1:205573916(-) A-I      intronic
chr1:205595031(-) A-I      intronic
chr1:205576655(-) A-I      intronic
chr1:205587251(-) A-I      intronic
chr1:205576661(-) A-I      intronic
chr1:205574629(-) A-I      intronic
chr1:205576064(-) A-I      intronic
chr1:205591340(-) A-I      intronic
chr1:205574976(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ELK4
chr1:205591620(-) A-I intron -    21960545
chr1:205591646(-) A-I intron -    21960545
chr1:205591659(-) A-I intron -    21960545
chr1:205586946(-) A-G intron -    22484847
chr1:205586995(-) A-G intron -    22484847
chr1:205586998(-) A-G intron -    22484847
chr1:205587187(-) A-G intron -    22484847
chr1:205587246(-) A-G intron -    22484847
chr1:205587308(-) A-G intron -    22484847
chr1:205590740(-) A-G intron -    22484847
chr1:205590785(-) A-G intron -    22484847
chr1:205590788(-) A-G intron -    22484847
chr1:205591242(-) A-G intron -    22484847
chr1:205591259(-) A-G intron -    22484847
chr1:205591266(-) A-G intron -    22484847
chr1:205591290(-) A-G intron -    22484847
chr1:205591340(-) A-G intron -    22484847
chr1:205591620(-) A-G intron -    22484847
chr1:205591646(-) A-G intron -    22484847
chr1:205591659(-) A-G intron -    22484847
chr1:205592021(-) A-G intron -    22484847
chr1:205592061(-) A-G intron -    22484847
chr1:205592073(-) A-G intron -    22484847
chr1:205592074(-) A-G intron -    22484847
chr1:205592164(-) A-G intron -    22484847
chr1:205592178(-) A-G intron -    22484847
chr1:205592203(-) A-G intron -    22484847
chr1:205592204(-) A-G intron -    22484847
chr1:205592247(-) A-G intron -    22484847
chr1:205592562(-) A-G intron -    22484847
chr1:205592575(-) A-G intron -    22484847
chr1:205592651(-) A-G intron -    22484847
chr1:205596448(-) A-G intron -    22484847
chr1:205599014(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ELK4
chr1:205569807-205569808(-) m6A 3'UTR       -
chr1:205569829-205569830(-) m6A 3'UTR       -
chr1:205569910-205569911(-) m6A 3'UTR       -
chr1:205577112-205577113(-) m6A 3'UTR//intron       27773535
chr1:205582896-205582897(-) m6A 3'UTR//intron       -
chr1:205583918-205583919(-) m6A 3'UTR//intron       24981863
chr1:205583949-205583950(-) m6A 3'UTR//intron       24981863
chr1:205584070-205584071(-) m6A 3'UTR//intron       27773535
chr1:205585219-205585220(-) m6A 3'UTR//intron       24981863//27773535
chr1:205585296-205585297(-) m6A 3'UTR//intron       24981863//27773535
chr1:205585323-205585324(-) m6A 3'UTR//intron       24209618//24981863//27773535
chr1:205585462-205585463(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr1:205585497-205585498(-) m6A 3'UTR//intron       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr1:205585508-205585509(-) m6A 3'UTR//intron       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr1:205585537-205585538(-) m6A 3'UTR//intron       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr1:205585569-205585570(-) m6A 3'UTR//intron       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:205585632-205585633(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr1:205585648-205585649(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr1:205585678-205585679(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr1:205585689-205585690(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr1:205585718-205585719(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr1:205585755-205585756(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr1:205588111-205588112(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr1:205588425-205588426(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535
chr1:205588444-205588445(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535
chr1:205588464-205588465(-) m6A 3'UTR//intron       24284625//24981863//27773535
chr1:205588527-205588528(-) m6A 3'UTR//intron       24981863//27773535
chr1:205589195-205589196(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:205589210-205589211(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:205589241-205589242(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:205589268-205589269(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:205589300-205589301(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:205589331-205589332(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:205589343-205589344(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:205589374-205589375(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:205589384-205589385(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:205589477-205589478(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr1:205589494-205589495(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr1:205589512-205589513(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr1:205589567-205589568(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:205589651-205589652(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:205589671-205589672(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:205589706-205589707(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:205589770-205589771(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:205589792-205589793(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:205589847-205589848(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr1:205589898-205589899(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr1:205600787-205600788(-) m6A 5'UTR       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-138-1-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
ELK4
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-138-1-3p
Interactor2: ELK4

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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