Detail Information

Basic Information:


  VIRBase ID:  

HHID00065964

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-145-3p:           IPCEF1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-145-3p IPCEF1
miRBase
Accession/Entrez ID		 MIMAT0004601 26034
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - PIP3-E

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-145-3p
rs190323149 chr5:149430704    C/T
rs747523129 chr5:149430701    A/G
rs769124485 chr5:149430706    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR IPCEF1
chr6:154554214(-) A-I      intronic
chr6:154561015(-) A-I      intronic
chr6:154561004(-) A-I      intronic
chr6:154561054(-) A-I      intronic
chr6:154562187(-) A-I      intronic
chr6:154562226(-) A-I      intronic
chr6:154562258(-) A-I      intronic
chr6:154562287(-) A-I      intronic
chr6:154562288(-) A-I      intronic
chr6:154562307(-) A-I      intronic
chr6:154562323(-) A-I      intronic
chr6:154562338(-) A-I      intronic
chr6:154562355(-) A-I      intronic
chr6:154563795(-) A-I      intronic
chr6:154563809(-) A-I      intronic
chr6:154563824(-) A-I      intronic
chr6:154580723(-) A-I      intronic
chr6:154586571(-) A-I      intronic
chr6:154586573(-) A-I      intronic
chr6:154586685(-) A-I      intronic
chr6:154586686(-) A-I      intronic
chr6:154594985(-) A-I      intronic
chr6:154595055(-) A-I      intronic
chr6:154595065(-) A-I      intronic
chr6:154595071(-) A-I      intronic
chr6:154595089(-) A-I      intronic
chr6:154595092(-) A-I      intronic
chr6:154610124(-) A-I      intronic
chr6:154617799(-) A-I      intronic
chr6:154617805(-) A-I      intronic
chr6:154621625(-) A-I      intronic
chr6:154621653(-) A-I      intronic
chr6:154621665(-) A-I      intronic
chr6:154621666(-) A-I      intronic
chr6:154624364(-) A-I      intronic
chr6:154629405(-) A-I      intronic
chr6:154633605(-) A-I      intronic
chr6:154633645(-) A-I      intronic
chr6:154633660(-) A-I      intronic
chr6:154634393(-) A-I      intronic
chr6:154634397(-) A-I      intronic
chr6:154634433(-) A-I      intronic
chr6:154634447(-) A-I      intronic
chr6:154636152(-) A-I      intronic
chr6:154636166(-) A-I      intronic
chr6:154642189(-) A-I      intronic
chr6:154642193(-) A-I      intronic
chr6:154642321(-) A-I      intronic
chr6:154644975(-) A-I      intronic
chr6:154645004(-) A-I      intronic
chr6:154645024(-) A-I      intronic
chr6:154645086(-) A-I      intronic
chr6:154645859(-) A-I      intronic
chr6:154645933(-) A-I      intronic
chr6:154650378(-) A-I      intronic
chr6:154650527(-) A-I      intronic
chr6:154517203(-) A-I      intronic
chr6:154517197(-) A-I      intronic
chr6:154650550(-) A-I      intronic
chr6:154650562(-) A-I      intronic
chr6:154650636(-) A-I      intronic
chr6:154652315(-) A-I      intronic
chr6:154490020(-) A-I      intronic
chr6:154656803(-) A-I      intronic
chr6:154657853(-) A-I      intronic
chr6:154657866(-) A-I      intronic
chr6:154657902(-) A-I      intronic
chr6:154657992(-) A-I      intronic
chr6:154663680(-) A-I      intronic
chr6:154663891(-) A-I      intronic
chr6:154517196(-) A-I      intronic
chr6:154517191(-) A-I      intronic
chr6:154517070(-) A-I      intronic
chr6:154517049(-) A-I      intronic
chr6:154517041(-) A-I      intronic
chr6:154516446(-) A-I      intronic
chr6:154516420(-) A-I      intronic
chr6:154516354(-) A-I      intronic
chr6:154515520(-) A-I      intronic
chr6:154515377(-) A-I      intronic
chr6:154515329(-) A-I      intronic
chr6:154515308(-) A-I      intronic
chr6:154512605(-) A-I      intronic
chr6:154504294(-) A-I      intronic
chr6:154504288(-) A-I      intronic
chr6:154504234(-) A-I      intronic
chr6:154504216(-) A-I      intronic
chr6:154504211(-) A-I      intronic
chr6:154504197(-) A-I      intronic
chr6:154504179(-) A-I      intronic
chr6:154504174(-) A-I      intronic
chr6:154666205(-) A-I      intronic
chr6:154490367(-) A-I      intronic
chr6:154490332(-) A-I      intronic
chr6:154490013(-) A-I      intronic
chr6:154489978(-) A-I      intronic
chr6:154489959(-) A-I      intronic
chr6:154670605(-) A-I      intronic
chr6:154670709(-) A-I      intronic
chr6:154671983(-) A-I      intronic
chr6:154671987(-) A-I      intronic
chr6:154671993(-) A-I      intronic
chr6:154672024(-) A-I      intronic
chr6:154523003(-) A-I      intronic
chr6:154545776(-) A-I      intronic
chr6:154545788(-) A-I      intronic
chr6:154545817(-) A-I      intronic
chr6:154548148(-) A-I      intronic
chr6:154548165(-) A-I      intronic
chr6:154549355(-) A-I      intronic
chr6:154549970(-) A-I      intronic
chr6:154550552(-) A-I      intronic
chr6:154550557(-) A-I      intronic
chr6:154550741(-) A-I      intronic
chr6:154550757(-) A-I      intronic
chr6:154554205(-) A-I      intronic
chr6:154489923(-) A-I      intronic
chr6:154560873(-) A-I      intronic
chr6:154554208(-) A-I      intronic
chr6:154554209(-) A-I      intronic
chr6:154554211(-) A-I      intronic
chr6:154554240(-) A-I      intronic
chr6:154554267(-) A-I      intronic
chr6:154555073(-) A-I      intronic
chr6:154555280(-) A-I      intronic
chr6:154555285(-) A-I      intronic
chr6:154555328(-) A-I      intronic
chr6:154560852(-) A-I      intronic
chr6:154647260(-) A-I      intronic
chr6:154560905(-) A-I      intronic
chr6:154560957(-) A-I      intronic
chr6:154561001(-) A-I      intronic
chr6:154545801(-) A-I      intronic
chr6:154560996(-) A-I      intronic
chr6:154545745(-) A-I      intronic
chr6:154663645(-) A-I      intronic
chr6:154618382(-) A-I      intronic
chr6:154550763(-) A-I      intronic
chr6:154624395(-) A-I      intronic
chr6:154674491(-) A-I      intronic
chr6:154560914(-) A-I      intronic
chr6:154627621(-) A-I      intronic
chr6:154504308(-) A-I      intronic
chr6:154618367(-) A-I      intronic
chr6:154555242(-) A-I      intronic
chr6:154560900(-) A-I      intronic
chr6:154550622(-) A-I      intronic
chr6:154644965(-) A-I      intronic
chr6:154660050(-) A-I      intronic
chr6:154650619(-) A-I      intronic
chr6:154633609(-) A-I      intronic
chr6:154674599(-) A-I      intronic
chr6:154618447(-) A-I      intronic
chr6:154548332(-) A-I      intronic
chr6:154645003(-) A-I      intronic
chr6:154550754(-) A-I      intronic
chr6:154651661(-) A-I      intronic
chr6:154549417(-) A-I      intronic
chr6:154549939(-) A-I      intronic
chr6:154644987(-) A-I      intronic
chr6:154651659(-) A-I      intronic
chr6:154561055(-) A-I      intronic
chr6:154671992(-) A-I      intronic
chr6:154505018(-) A-I      intronic
chr6:154549427(-) A-I      intronic
chr6:154578977(-) A-I      intronic
chr6:154633759(-) A-I      intronic
chr6:154549978(-) A-I      intronic
chr6:154618284(-) A-I      intronic
chr6:154624973(-) A-I      intronic
chr6:154563983(-) A-I      intronic
chr6:154581877(-) A-I      intronic
chr6:154580624(-) A-I      intronic
chr6:154555163(-) A-I      intronic
chr6:154650564(-) A-I      intronic
chr6:154634154(-) A-I      intronic
chr6:154649639(-) A-I      intronic
chr6:154623711(-) A-I      intronic
chr6:154515354(-) A-I      intronic
chr6:154561019(-) A-I      intronic
chr6:154670399(-) A-I      intronic
chr6:154633675(-) A-I      intronic
chr6:154652318(-) A-I      intronic
chr6:154674524(-) A-I      intronic
chr6:154560966(-) A-I      intronic
chr6:154633613(-) A-I      intronic
chr6:154512078(-) A-I      intronic
chr6:154651713(-) A-I      intronic
chr6:154560934(-) A-I      intronic
chr6:154561078(-) A-I      intronic
chr6:154561103(-) A-I      intronic
chr6:154555282(-) A-I      intronic
chr6:154663684(-) A-I      intronic
chr6:154517090(-) A-I      intronic
chr6:154661612(-) A-I      intronic
chr6:154604306(-) A-I      intronic
chr6:154624968(-) A-I      intronic
chr6:154490489(-) A-I      intronic
chr6:154549904(-) A-I      intronic
chr6:154504225(-) A-I      intronic
chr6:154548159(-) A-I      intronic
chr6:154559975(-) A-I      intronic
chr6:154623881(-) A-I      intronic
chr6:154554199(-) A-I      intronic
chr6:154621734(-) A-I      intronic
chr6:154512625(-) A-I      intronic
chr6:154623637(-) A-I      intronic
chr6:154629556(-) A-I      intronic
chr6:154664055(-) A-I      intronic
chr6:154652301(-) A-I      intronic
chr6:154554235(-) A-I      intronic
chr6:154621632(-) A-I      intronic
chr6:154624396(-) A-I      intronic
chr6:154645025(-) A-I      intronic
chr6:154642338(-) A-I      intronic
chr6:154560903(-) A-I      intronic
chr6:154636235(-) A-I      intronic
chr6:154660816(-) A-I      intronic
chr6:154629377(-) A-I      intronic
chr6:154629309(-) A-I      intronic
chr6:154504941(-) A-I      intronic
chr6:154562204(-) A-I      intronic
chr6:154650341(-) A-I      intronic
chr6:154650353(-) A-I      intronic
chr6:154670464(-) A-I      intronic
chr6:154512628(-) A-I      intronic
chr6:154621500(-) A-I      intronic
chr6:154563975(-) A-I      intronic
chr6:154504942(-) A-I      intronic
chr6:154660958(-) A-I      intronic
chr6:154629369(-) A-I      intronic
chr6:154562128(-) A-I      intronic
chr6:154647265(-) A-I      intronic
chr6:154554330(-) A-I      intronic
chr6:154555220(-) A-I      intronic
chr6:154562190(-) A-I      intronic
chr6:154562127(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED IPCEF1
chr6:154618447(-) A-I intron -    22327324
chr6:154617707(-) A-G intron -    22484847
chr6:154618284(-) A-G intron -    22484847
chr6:154618347(-) A-G intron -    22484847
chr6:154618367(-) A-G intron -    22484847
chr6:154618377(-) A-G intron -    22484847
chr6:154618382(-) A-G intron -    22484847
chr6:154618446(-) A-G intron -    22484847
chr6:154618447(-) A-G intron -    22484847
chr6:154621500(-) A-G intron -    22484847
chr6:154621632(-) A-G intron -    22484847
chr6:154621671(-) A-G intron -    22484847
chr6:154621734(-) A-G intron -    22484847
chr6:154623711(-) A-G intron -    22484847
chr6:154623765(-) G-A intron -    22484847
chr6:154623881(-) A-G intron -    22484847
chr6:154624395(-) A-G intron -    22484847
chr6:154624396(-) A-G intron -    22484847
chr6:154624496(-) A-G intron -    22484847
chr6:154624968(-) A-G intron -    22484847
chr6:154624972(-) A-G intron -    22484847
chr6:154624973(-) A-G intron -    22484847
chr6:154629309(-) A-G intron -    22484847
chr6:154629556(-) A-G intron -    22484847
chr6:154633559(-) A-G intron -    22484847
chr6:154633609(-) A-G intron -    22484847
chr6:154633613(-) A-G intron -    22484847
chr6:154633675(-) A-G intron -    22484847
chr6:154633691(-) T-C intron -    22484847
chr6:154633759(-) A-G intron -    22484847
chr6:154633775(-) A-G intron -    22484847
chr6:154634482(-) A-G intron -    22484847
chr6:154642338(-) A-G intron -    22484847
chr6:154644965(-) A-G intron -    22484847
chr6:154644987(-) A-G intron -    22484847
chr6:154645003(-) A-G intron -    22484847
chr6:154645025(-) A-G intron -    22484847
chr6:154650353(-) A-G intron -    22484847
chr6:154651659(-) A-G intron -    22484847
chr6:154652301(-) A-G intron -    22484847
chr6:154658011(-) A-G intron -    22484847
chr6:154660759(-) A-G intron -    22484847
chr6:154660862(-) A-G intron -    22484847
chr6:154660958(-) A-G intron -    22484847
chr6:154661870(-) A-G intron -    22484847
chr6:154663684(-) A-G intron -    22484847
chr6:154664055(-) A-G intron -    22484847
chr6:154672122(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase IPCEF1
chr6:154476291-154476292(-) m6A 3'UTR//intron       -
chr6:154480011-154480012(-) m6A 3'UTR//intron       -
chr6:154480037-154480038(-) m6A 3'UTR//intron       -
chr6:154480043-154480044(-) m6A 3'UTR//intron       -
chr6:154480051-154480052(-) m6A 3'UTR//intron       -
chr6:154480241-154480242(-) m6A 3'UTR//exon//intron       -
chr6:154480261-154480262(-) m6A 3'UTR//exon//intron       -
chr6:154480338-154480339(-) m6A 3'UTR//exon       25456834//28052920//27371828
chr6:154480398-154480399(-) m6A 3'UTR//exon       25456834//28052920//27371828//22608085
chr6:154480465-154480466(-) m6A 3'UTR//exon       25456834//24981863//28052920//27371828//22608085
chr6:154480484-154480485(-) m6A 3'UTR//exon       25456834//24981863//28052920//27371828//22608085
chr6:154480594-154480595(-) m6A 3'UTR//exon       28052920
chr6:154480633-154480634(-) m6A 3'UTR//exon       -
chr6:154480867-154480868(-) m6A 3'UTR//exon       -
chr6:154480873-154480874(-) m6A 3'UTR//exon       -
chr6:154480960-154480961(-) m6A 3'UTR//exon       -
chr6:154481007-154481008(-) m6A CDS//exon       28052920
chr6:154481068-154481069(-) m6A CDS//exon       -
chr6:154481086-154481087(-) m6A CDS//exon       -
chr6:154520896-154520897(-) m6A CDS//exon       28052920
chr6:154520929-154520930(-) m6A CDS//exon       28052920
chr6:154521003-154521004(-) m6A CDS//exon       28052920//26404942
chr6:154521054-154521055(-) m6A CDS//exon       28052920
chr6:154521092-154521093(-) m6A CDS//exon       28052920

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-145-3p
Exosome Breast milk     22211110
Exosome Plasma     23663360
Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
IPCEF1
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-145-3p
Interactor2: IPCEF1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...