Detail Information

Basic Information:


  VIRBase ID:  

HHID00065923

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-143-5p:           SAMHD1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-143-5p SAMHD1
miRBase
Accession/Entrez ID
MIMAT0004599 25939
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CHBL2//DCIP//HDDC1//hSAMHD1//MOP-5//SBBI88

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-143-5p
rs1240622815 chr5:149428959    C/T
rs1379718357 chr5:149428964    G/A
rs747639742 chr5:149428962    T/C
rs1440810125 chr5:149428950    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SAMHD1
chr20:35563103(-) A-I      intronic
chr20:35563128(-) A-I      intronic
chr20:35541212(-) A-I      intronic
chr20:35532155(-) A-I      intronic
chr20:35563137(-) A-I      intronic
chr20:35541227(-) A-I      intronic
chr20:35532159(-) A-I      intronic
chr20:35532172(-) A-I      intronic
chr20:35534717(-) A-I      intronic
chr20:35541245(-) A-I      intronic
chr20:35563158(-) A-I      intronic
chr20:35563170(-) A-I      intronic
chr20:35563186(-) A-I      intronic
chr20:35563218(-) A-I      intronic
chr20:35563237(-) A-I      intronic
chr20:35563262(-) A-I      intronic
chr20:35563280(-) A-I      intronic
chr20:35564530(-) A-I      intronic
chr20:35571254(-) A-I      intronic
chr20:35541569(-) A-I      intronic
chr20:35571255(-) A-I      intronic
chr20:35541581(-) A-I      intronic
chr20:35541596(-) A-I      intronic
chr20:35541597(-) A-I      intronic
chr20:35542275(-) A-I      intronic
chr20:35542301(-) A-I      intronic
chr20:35542327(-) A-I      intronic
chr20:35542966(-) A-I      intronic
chr20:35543327(-) A-I      intronic
chr20:35519071(-) A-I      3'UTR
chr20:35519118(-) A-I      3'UTR
chr20:35519131(-) A-I      3'UTR
chr20:35519132(-) A-I      3'UTR
chr20:35519137(-) A-I      3'UTR
chr20:35519148(-) A-I      3'UTR
chr20:35543328(-) A-I      intronic
chr20:35542317(-) A-I      intronic
chr20:35543329(-) A-I      intronic
chr20:35543393(-) A-I      intronic
chr20:35555817(-) A-I      intronic
chr20:35555885(-) A-I      intronic
chr20:35555896(-) A-I      intronic
chr20:35561087(-) A-I      intronic
chr20:35555902(-) A-I      intronic
chr20:35558033(-) A-I      intronic
chr20:35558071(-) A-I      intronic
chr20:35558078(-) A-I      intronic
chr20:35558771(-) A-I      intronic
chr20:35558777(-) A-I      intronic
chr20:35558787(-) A-I      intronic
chr20:35558799(-) A-I      intronic
chr20:35558817(-) A-I      intronic
chr20:35560985(-) A-I      intronic
chr20:35525070(-) A-I      intronic
chr20:35525072(-) A-I      intronic
chr20:35532151(-) A-I      intronic
chr20:35560995(-) A-I      intronic
chr20:35561013(-) A-I      intronic
chr20:35561093(-) A-I      intronic
chr20:35563088(-) A-I      intronic
chr20:35563090(-) A-I      intronic
chr20:35534729(-) A-I      intronic
chr20:35563095(-) A-I      intronic
chr20:35534740(-) A-I      intronic
chr20:35534741(-) A-I      intronic
chr20:35532158(-) A-I      intronic
chr20:35534758(-) A-I      intronic
chr20:35536738(-) A-I      intronic
chr20:35536762(-) A-I      intronic
chr20:35541194(-) A-I      intronic
chr20:35577184(-) A-I      intronic
chr20:35577236(-) A-I      intronic
chr20:35577645(-) A-I      intronic
chr20:35528831(-) A-I      intronic
chr20:35576776(-) A-I      intronic
chr20:35576767(-) A-I      intronic
chr20:35576758(-) A-I      intronic
chr20:35574908(-) A-I      intronic
chr20:35574874(-) A-I      intronic
chr20:35572405(-) A-I      intronic
chr20:35572398(-) A-I      intronic
chr20:35572369(-) A-I      intronic
chr20:35572359(-) A-I      intronic
chr20:35571240(-) A-I      intronic
chr20:35570782(-) A-I      intronic
chr20:35570631(-) A-I      intronic
chr20:35569066(-) A-I      intronic
chr20:35569050(-) A-I      intronic
chr20:35569019(-) A-I      intronic
chr20:35569002(-) A-I      intronic
chr20:35567936(-) A-I      intronic
chr20:35567917(-) A-I      intronic
chr20:35567869(-) A-I      intronic
chr20:35567223(-) A-I      intronic
chr20:35567192(-) A-I      intronic
chr20:35567187(-) A-I      intronic
chr20:35566880(-) A-I      intronic
chr20:35566861(-) A-I      intronic
chr20:35566860(-) A-I      intronic
chr20:35566857(-) A-I      intronic
chr20:35566856(-) A-I      intronic
chr20:35566562(-) A-I      intronic
chr20:35566538(-) A-I      intronic
chr20:35566408(-) A-I      intronic
chr20:35566382(-) A-I      intronic
chr20:35566364(-) A-I      intronic
chr20:35566323(-) A-I      intronic
chr20:35565538(-) A-I      intronic
chr20:35565530(-) A-I      intronic
chr20:35565517(-) A-I      intronic
chr20:35565500(-) A-I      intronic
chr20:35565462(-) A-I      intronic
chr20:35565461(-) A-I      intronic
chr20:35565457(-) A-I      intronic
chr20:35565396(-) A-I      intronic
chr20:35565395(-) A-I      intronic
chr20:35565241(-) A-I      intronic
chr20:35565239(-) A-I      intronic
chr20:35564990(-) A-I      intronic
chr20:35564821(-) A-I      intronic
chr20:35564797(-) A-I      intronic
chr20:35564599(-) A-I      intronic
chr20:35564459(-) A-I      intronic
chr20:35564079(-) A-I      intronic
chr20:35564077(-) A-I      intronic
chr20:35564063(-) A-I      intronic
chr20:35564031(-) A-I      intronic
chr20:35563340(-) A-I      intronic
chr20:35563288(-) A-I      intronic
chr20:35563279(-) A-I      intronic
chr20:35563274(-) A-I      intronic
chr20:35563255(-) A-I      intronic
chr20:35563236(-) A-I      intronic
chr20:35563200(-) A-I      intronic
chr20:35563173(-) A-I      intronic
chr20:35563164(-) A-I      intronic
chr20:35562879(-) A-I      intronic
chr20:35562843(-) A-I      intronic
chr20:35562815(-) A-I      intronic
chr20:35562405(-) A-I      intronic
chr20:35562327(-) A-I      intronic
chr20:35562276(-) A-I      intronic
chr20:35562076(-) A-I      intronic
chr20:35562070(-) A-I      intronic
chr20:35562069(-) A-I      intronic
chr20:35562061(-) A-I      intronic
chr20:35561936(-) A-I      intronic
chr20:35561109(-) A-I      intronic
chr20:35561101(-) A-I      intronic
chr20:35561057(-) A-I      intronic
chr20:35560881(-) A-I      intronic
chr20:35558767(-) A-I      intronic
chr20:35558733(-) A-I      intronic
chr20:35558052(-) A-I      intronic
chr20:35557879(-) A-I      intronic
chr20:35557421(-) A-I      intronic
chr20:35557416(-) A-I      intronic
chr20:35557397(-) A-I      intronic
chr20:35557391(-) A-I      intronic
chr20:35557384(-) A-I      intronic
chr20:35557216(-) A-I      intronic
chr20:35557215(-) A-I      intronic
chr20:35557197(-) A-I      intronic
chr20:35556922(-) A-I      intronic
chr20:35556900(-) A-I      intronic
chr20:35556896(-) A-I      intronic
chr20:35556644(-) A-I      intronic
chr20:35556625(-) A-I      intronic
chr20:35556619(-) A-I      intronic
chr20:35556572(-) A-I      intronic
chr20:35556560(-) A-I      intronic
chr20:35556547(-) A-I      intronic
chr20:35556354(-) A-I      intronic
chr20:35556332(-) A-I      intronic
chr20:35556322(-) A-I      intronic
chr20:35555993(-) A-I      intronic
chr20:35555957(-) A-I      intronic
chr20:35555867(-) A-I      intronic
chr20:35555832(-) A-I      intronic
chr20:35555826(-) A-I      intronic
chr20:35555804(-) A-I      intronic
chr20:35553447(-) A-I      intronic
chr20:35551318(-) A-I      intronic
chr20:35551308(-) A-I      intronic
chr20:35551071(-) A-I      intronic
chr20:35551055(-) A-I      intronic
chr20:35551028(-) A-I      intronic
chr20:35551008(-) A-I      intronic
chr20:35550236(-) A-I      intronic
chr20:35550127(-) A-I      intronic
chr20:35550126(-) A-I      intronic
chr20:35548688(-) A-I      intronic
chr20:35548633(-) A-I      intronic
chr20:35548632(-) A-I      intronic
chr20:35546649(-) A-I      intronic
chr20:35544138(-) A-I      intronic
chr20:35543968(-) A-I      intronic
chr20:35543922(-) A-I      intronic
chr20:35543905(-) A-I      intronic
chr20:35543285(-) A-I      intronic
chr20:35543280(-) A-I      intronic
chr20:35543193(-) A-I      intronic
chr20:35543005(-) A-I      intronic
chr20:35542955(-) A-I      intronic
chr20:35542901(-) A-I      intronic
chr20:35542865(-) A-I      intronic
chr20:35542862(-) A-I      intronic
chr20:35542861(-) A-I      intronic
chr20:35542821(-) A-I      intronic
chr20:35542801(-) A-I      intronic
chr20:35542361(-) A-I      intronic
chr20:35542352(-) A-I      intronic
chr20:35542351(-) A-I      intronic
chr20:35542333(-) A-I      intronic
chr20:35542326(-) A-I      intronic
chr20:35542324(-) A-I      intronic
chr20:35542295(-) A-I      intronic
chr20:35542289(-) A-I      intronic
chr20:35542285(-) A-I      intronic
chr20:35542281(-) A-I      intronic
chr20:35542225(-) A-I      intronic
chr20:35542201(-) A-I      intronic
chr20:35542190(-) A-I      intronic
chr20:35541967(-) A-I      intronic
chr20:35541919(-) A-I      intronic
chr20:35541911(-) A-I      intronic
chr20:35541882(-) A-I      intronic
chr20:35541857(-) A-I      intronic
chr20:35541835(-) A-I      intronic
chr20:35541824(-) A-I      intronic
chr20:35541763(-) A-I      intronic
chr20:35541762(-) A-I      intronic
chr20:35541750(-) A-I      intronic
chr20:35541748(-) A-I      intronic
chr20:35541689(-) A-I      intronic
chr20:35541672(-) A-I      intronic
chr20:35541667(-) A-I      intronic
chr20:35541661(-) A-I      intronic
chr20:35541629(-) A-I      intronic
chr20:35541605(-) A-I      intronic
chr20:35541603(-) A-I      intronic
chr20:35541601(-) A-I      intronic
chr20:35541595(-) A-I      intronic
chr20:35528828(-) A-I      intronic
chr20:35528826(-) A-I      intronic
chr20:35528825(-) A-I      intronic
chr20:35528813(-) A-I      intronic
chr20:35528751(-) A-I      intronic
chr20:35528706(-) A-I      intronic
chr20:35528687(-) A-I      intronic
chr20:35528679(-) A-I      intronic
chr20:35528397(-) A-I      intronic
chr20:35528385(-) A-I      intronic
chr20:35528240(-) A-I      intronic
chr20:35525200(-) A-I      intronic
chr20:35525162(-) A-I      intronic
chr20:35524612(-) A-I      intronic
chr20:35524556(-) A-I      intronic
chr20:35523414(-) A-I      intronic
chr20:35523373(-) A-I      intronic
chr20:35523164(-) A-I      intronic
chr20:35523124(-) A-I      intronic
chr20:35523113(-) A-I      intronic
chr20:35523107(-) A-I      intronic
chr20:35523002(-) A-I      intronic
chr20:35522987(-) A-I      intronic
chr20:35522839(-) A-I      intronic
chr20:35522831(-) A-I      intronic
chr20:35522829(-) A-I      intronic
chr20:35522716(-) A-I      intronic
chr20:35576777(-) A-I      intronic
chr20:35577027(-) A-I      intronic
chr20:35577028(-) A-I      intronic
chr20:35577029(-) A-I      intronic
chr20:35577104(-) A-I      intronic
chr20:35577113(-) A-I      intronic
chr20:35577183(-) A-I      intronic
chr20:35541590(-) A-I      intronic
chr20:35541575(-) A-I      intronic
chr20:35541572(-) A-I      intronic
chr20:35541548(-) A-I      intronic
chr20:35541496(-) A-I      intronic
chr20:35541485(-) A-I      intronic
chr20:35541452(-) A-I      intronic
chr20:35541447(-) A-I      intronic
chr20:35541438(-) A-I      intronic
chr20:35541437(-) A-I      intronic
chr20:35541433(-) A-I      intronic
chr20:35539472(-) A-I      intronic
chr20:35539454(-) A-I      intronic
chr20:35538984(-) A-I      intronic
chr20:35538976(-) A-I      intronic
chr20:35538967(-) A-I      intronic
chr20:35538916(-) A-I      intronic
chr20:35538818(-) A-I      intronic
chr20:35538582(-) A-I      intronic
chr20:35538580(-) A-I      intronic
chr20:35538579(-) A-I      intronic
chr20:35538393(-) A-I      intronic
chr20:35538081(-) A-I      intronic
chr20:35537915(-) A-I      intronic
chr20:35537909(-) A-I      intronic
chr20:35537828(-) A-I      intronic
chr20:35537616(-) A-I      intronic
chr20:35537611(-) A-I      intronic
chr20:35537503(-) A-I      intronic
chr20:35537450(-) A-I      intronic
chr20:35536896(-) A-I      intronic
chr20:35536895(-) A-I      intronic
chr20:35536892(-) A-I      intronic
chr20:35536834(-) A-I      intronic
chr20:35536706(-) A-I      intronic
chr20:35536554(-) A-I      intronic
chr20:35536552(-) A-I      intronic
chr20:35536497(-) A-I      intronic
chr20:35536495(-) A-I      intronic
chr20:35536482(-) A-I      intronic
chr20:35536449(-) A-I      intronic
chr20:35536442(-) A-I      intronic
chr20:35535788(-) A-I      intronic
chr20:35535756(-) A-I      intronic
chr20:35535368(-) A-I      intronic
chr20:35535323(-) A-I      intronic
chr20:35535297(-) A-I      intronic
chr20:35535263(-) A-I      intronic
chr20:35534330(-) A-I      intronic
chr20:35534329(-) A-I      intronic
chr20:35534290(-) A-I      intronic
chr20:35531816(-) A-I      intronic
chr20:35531771(-) A-I      intronic
chr20:35531754(-) A-I      intronic
chr20:35531739(-) A-I      intronic
chr20:35531278(-) A-I      intronic
chr20:35531261(-) A-I      intronic
chr20:35531193(-) A-I      intronic
chr20:35531170(-) A-I      intronic
chr20:35530056(-) A-I      intronic
chr20:35530017(-) A-I      intronic
chr20:35529936(-) A-I      intronic
chr20:35529728(-) A-I      intronic
chr20:35529675(-) A-I      intronic
chr20:35529665(-) A-I      intronic
chr20:35529660(-) A-I      intronic
chr20:35529640(-) A-I      intronic
chr20:35529610(-) A-I      intronic
chr20:35528876(-) A-I      intronic
chr20:35528873(-) A-I      intronic
chr20:35528843(-) A-I      intronic
chr20:35523083(-) A-I      intronic
chr20:35518979(-) A-I      3'UTR
chr20:35520153(-) A-I      3'UTR
chr20:35520959(-) A-I      3'UTR
chr20:35519154(-) A-I      3'UTR
chr20:35519064(-) A-I      3'UTR
chr20:35519108(-) A-I      3'UTR
chr20:35519000(-) A-I      3'UTR
chr20:35521031(-) A-I      3'UTR
chr20:35520219(-) A-I      3'UTR
chr20:35519006(-) A-I      3'UTR
chr20:35519075(-) A-I      3'UTR
chr20:35520936(-) A-I      3'UTR
chr20:35518953(-) A-I      3'UTR
chr20:35519107(-) A-I      3'UTR
chr20:35520919(-) A-I      3'UTR
chr20:35520202(-) A-I      3'UTR
chr20:35519109(-) A-I      3'UTR
chr20:35520223(-) A-I      3'UTR
chr20:35521030(-) A-I      3'UTR
chr20:35518996(-) A-I      3'UTR
chr20:35520206(-) A-I      3'UTR
chr20:35519153(-) A-I      3'UTR
chr20:35519175(-) A-I      3'UTR
chr20:35518935(-) A-I      3'UTR
chr20:35544452(-) A-I      intronic
chr20:35567143(-) A-I      intronic
chr20:35534803(-) A-I      intronic
chr20:35565284(-) A-I      intronic
chr20:35525088(-) A-I      intronic
chr20:35525089(-) A-I      intronic
chr20:35525236(-) A-I      intronic
chr20:35567186(-) A-I      intronic
chr20:35563121(-) A-I      intronic
chr20:35529247(-) A-I      intronic
chr20:35523118(-) A-I      intronic
chr20:35541515(-) A-I      intronic
chr20:35561002(-) A-I      intronic
chr20:35549058(-) A-I      intronic
chr20:35531781(-) A-I      intronic
chr20:35567166(-) A-I      intronic
chr20:35523305(-) A-I      intronic
chr20:35544838(-) A-I      intronic
chr20:35564981(-) A-I      intronic
chr20:35555789(-) A-I      intronic
chr20:35566358(-) A-I      intronic
chr20:35543013(-) A-I      intronic
chr20:35541878(-) A-I      intronic
chr20:35522830(-) A-I      intronic
chr20:35543332(-) A-I      intronic
chr20:35557920(-) A-I      intronic
chr20:35522707(-) A-I      intronic
chr20:35555775(-) A-I      intronic
chr20:35543992(-) A-I      intronic
chr20:35544562(-) A-I      intronic
chr20:35527634(-) A-I      intronic
chr20:35542891(-) A-I      intronic
chr20:35571265(-) A-I      intronic
chr20:35529918(-) A-I      intronic
chr20:35562869(-) A-I      intronic
chr20:35525090(-) A-I      intronic
chr20:35544442(-) A-I      intronic
chr20:35522708(-) A-I      intronic
chr20:35541472(-) A-I      intronic
chr20:35555869(-) A-I      intronic
chr20:35563249(-) A-I      intronic
chr20:35530023(-) A-I      intronic
chr20:35542429(-) A-I      intronic
chr20:35568547(-) A-I      intronic
chr20:35525194(-) A-I      intronic
chr20:35524559(-) A-I      intronic
chr20:35565400(-) A-I      intronic
chr20:35567050(-) A-I      intronic
chr20:35534837(-) A-I      intronic
chr20:35531819(-) A-I      intronic
chr20:35543874(-) A-I      intronic
chr20:35535280(-) A-I      intronic
chr20:35538780(-) A-I      intronic
chr20:35549083(-) A-I      intronic
chr20:35561047(-) A-I      intronic
chr20:35549713(-) A-I      intronic
chr20:35538792(-) A-I      intronic
chr20:35543156(-) A-I      intronic
chr20:35569007(-) A-I      intronic
chr20:35542413(-) A-I      intronic
chr20:35565378(-) A-I      intronic
chr20:35546531(-) A-I      intronic
chr20:35541267(-) A-I      intronic
chr20:35562863(-) A-I      intronic
chr20:35537561(-) A-I      intronic
chr20:35529098(-) A-I      intronic
chr20:35543000(-) A-I      intronic
chr20:35573579(-) A-I      intronic
chr20:35529598(-) A-I      intronic
chr20:35539407(-) A-I      intronic
chr20:35538970(-) A-I      intronic
chr20:35561099(-) A-I      intronic
chr20:35525175(-) A-I      intronic
chr20:35565153(-) A-I      intronic
chr20:35552180(-) A-I      intronic
chr20:35537827(-) A-I      intronic
chr20:35550343(-) A-I      intronic
chr20:35530700(-) A-I      intronic
chr20:35525138(-) A-I      intronic
chr20:35548722(-) A-I      intronic
chr20:35546478(-) A-I      intronic
chr20:35543036(-) A-I      intronic
chr20:35523003(-) A-I      intronic
chr20:35548579(-) A-I      intronic
chr20:35541984(-) A-I      intronic
chr20:35538965(-) A-I      intronic
chr20:35538027(-) A-I      intronic
chr20:35555859(-) A-I      intronic
chr20:35561021(-) A-I      intronic
chr20:35528254(-) A-I      intronic
chr20:35531983(-) A-I      intronic
chr20:35548952(-) A-I      intronic
chr20:35524983(-) A-I      intronic
chr20:35571188(-) A-I      intronic
chr20:35541894(-) A-I      intronic
chr20:35543991(-) A-I      intronic
chr20:35568488(-) A-I      intronic
chr20:35551279(-) A-I      intronic
chr20:35564452(-) A-I      intronic
chr20:35529904(-) A-I      intronic
chr20:35548999(-) A-I      intronic
chr20:35563154(-) A-I      intronic
chr20:35520977(-) A-I      3'UTR
chr20:35521023(-) A-I      3'UTR
chr20:35520915(-) A-I      3'UTR
chr20:35520947(-) A-I      3'UTR
chr20:35520924(-) A-I      3'UTR
chr20:35520229(-) A-I      3'UTR
chr20:35519005(-) A-I      3'UTR
chr20:35519145(-) A-I      3'UTR
chr20:35546023(-) A-I      intronic
chr20:35527072(-) A-I      intronic
chr20:35523022(-) A-I      intronic
chr20:35530823(-) A-I      intronic
chr20:35543401(-) A-I      intronic
chr20:35523368(-) A-I      intronic
chr20:35534293(-) A-I      intronic
chr20:35522712(-) A-I      intronic
chr20:35566821(-) A-I      intronic
chr20:35543705(-) A-I      intronic
chr20:35550371(-) A-I      intronic
chr20:35522835(-) A-I      intronic
chr20:35537656(-) A-I      intronic
chr20:35531807(-) A-I      intronic
chr20:35562666(-) A-I      intronic
chr20:35522780(-) A-I      intronic
chr20:35523413(-) A-I      intronic
chr20:35577545(-) A-I      intronic
chr20:35563226(-) A-I      intronic
chr20:35527232(-) A-I      intronic
chr20:35542360(-) A-I      intronic
chr20:35551231(-) A-I      intronic
chr20:35555813(-) A-I      intronic
chr20:35557082(-) A-I      intronic
chr20:35549054(-) A-I      intronic
chr20:35563336(-) A-I      intronic
chr20:35561972(-) A-I      intronic
chr20:35538768(-) A-I      intronic
chr20:35543238(-) A-I      intronic
chr20:35542356(-) A-I      intronic
chr20:35563222(-) A-I      intronic
chr20:35536121(-) A-I      intronic
chr20:35523420(-) A-I      intronic
chr20:35535224(-) A-I      intronic
chr20:35542826(-) A-I      intronic
chr20:35564489(-) A-I      intronic
chr20:35542373(-) A-I      intronic
chr20:35544024(-) A-I      intronic
chr20:35556001(-) A-I      intronic
chr20:35543689(-) A-I      intronic
chr20:35548596(-) A-I      intronic
chr20:35543189(-) A-I      intronic
chr20:35528461(-) A-I      intronic
chr20:35556249(-) A-I      intronic
chr20:35546591(-) A-I      intronic
chr20:35537815(-) A-I      intronic
chr20:35566359(-) A-I      intronic
chr20:35556368(-) A-I      intronic
chr20:35542452(-) A-I      intronic
chr20:35530044(-) A-I      intronic
chr20:35543320(-) A-I      intronic
chr20:35558068(-) A-I      intronic
chr20:35556610(-) A-I      intronic
chr20:35564437(-) A-I      intronic
chr20:35543303(-) A-I      intronic
chr20:35556338(-) A-I      intronic
chr20:35556578(-) A-I      intronic
chr20:35536080(-) A-I      intronic
chr20:35564856(-) A-I      intronic
chr20:35565172(-) A-I      intronic
chr20:35558813(-) A-I      intronic
chr20:35553437(-) A-I      intronic
chr20:35560997(-) A-I      intronic
chr20:35565171(-) A-I      intronic
chr20:35529967(-) A-I      intronic
chr20:35541673(-) A-I      intronic
chr20:35542921(-) A-I      intronic
chr20:35558636(-) A-I      intronic
chr20:35542892(-) A-I      intronic
chr20:35535377(-) A-I      intronic
chr20:35546555(-) A-I      intronic
chr20:35522824(-) A-I      intronic
chr20:35556345(-) A-I      intronic
chr20:35542929(-) A-I      intronic
chr20:35548925(-) A-I      intronic
chr20:35566463(-) A-I      intronic
chr20:35542268(-) A-I      intronic
chr20:35556341(-) A-I      intronic
chr20:35551284(-) A-I      intronic
chr20:35523004(-) A-I      intronic
chr20:35549002(-) A-I      intronic
chr20:35573553(-) A-I      intronic
chr20:35562850(-) A-I      intronic
chr20:35548972(-) A-I      intronic
chr20:35542254(-) A-I      intronic
chr20:35566686(-) A-I      intronic
chr20:35564594(-) A-I      intronic
chr20:35555919(-) A-I      intronic
chr20:35565125(-) A-I      intronic
chr20:35566939(-) A-I      intronic
chr20:35541923(-) A-I      intronic
chr20:35525116(-) A-I      intronic
chr20:35527203(-) A-I      intronic
chr20:35566400(-) A-I      intronic
chr20:35541884(-) A-I      intronic
chr20:35564581(-) A-I      intronic
chr20:35563199(-) A-I      intronic
chr20:35530125(-) A-I      intronic
chr20:35556252(-) A-I      intronic
chr20:35535359(-) A-I      intronic
chr20:35541564(-) A-I      intronic
chr20:35522777(-) A-I      intronic
chr20:35542294(-) A-I      intronic
chr20:35537558(-) A-I      intronic
chr20:35531345(-) A-I      intronic
chr20:35556248(-) A-I      intronic
chr20:35563133(-) A-I      intronic
chr20:35566413(-) A-I      intronic
chr20:35541218(-) A-I      intronic
chr20:35543996(-) A-I      intronic
chr20:35568527(-) A-I      intronic
chr20:35529696(-) A-I      intronic
chr20:35531705(-) A-I      intronic
chr20:35536545(-) A-I      intronic
chr20:35537502(-) A-I      intronic
chr20:35536416(-) A-I      intronic
chr20:35538319(-) A-I      intronic
chr20:35522745(-) A-I      intronic
chr20:35564547(-) A-I      intronic
chr20:35529706(-) A-I      intronic
chr20:35537547(-) A-I      intronic
chr20:35542430(-) A-I      intronic
chr20:35537855(-) A-I      intronic
chr20:35539021(-) A-I      intronic
chr20:35555781(-) A-I      intronic
chr20:35530681(-) A-I      intronic
chr20:35566941(-) A-I      intronic
chr20:35527060(-) A-I      intronic
chr20:35549084(-) A-I      intronic
chr20:35543144(-) A-I      intronic
chr20:35542350(-) A-I      intronic
chr20:35560993(-) A-I      intronic
chr20:35535632(-) A-I      intronic
chr20:35565242(-) A-I      intronic
chr20:35542321(-) A-I      intronic
chr20:35530829(-) A-I      intronic
chr20:35547517(-) A-I      intronic
chr20:35552499(-) A-I      intronic
chr20:35535617(-) A-I      intronic
chr20:35544863(-) A-I      intronic
chr20:35543881(-) A-I      intronic
chr20:35522737(-) A-I      intronic
chr20:35546776(-) A-I      intronic
chr20:35564748(-) A-I      intronic
chr20:35551229(-) A-I      intronic
chr20:35536916(-) A-I      intronic
chr20:35535208(-) A-I      intronic
chr20:35560503(-) A-I      intronic
chr20:35557079(-) A-I      intronic
chr20:35542827(-) A-I      intronic
chr20:35550946(-) A-I      intronic
chr20:35527132(-) A-I      intronic
chr20:35541231(-) A-I      intronic
chr20:35531281(-) A-I      intronic
chr20:35555788(-) A-I      intronic
chr20:35549103(-) A-I      intronic
chr20:35560996(-) A-I      intronic
chr20:35556014(-) A-I      intronic
chr20:35562681(-) A-I      intronic
chr20:35560921(-) A-I      intronic
chr20:35538053(-) A-I      intronic
chr20:35555913(-) A-I      intronic
chr20:35548738(-) A-I      intronic
chr20:35544792(-) A-I      intronic
chr20:35525230(-) A-I      intronic
chr20:35535422(-) A-I      intronic
chr20:35542987(-) A-I      intronic
chr20:35542253(-) A-I      intronic
chr20:35557352(-) A-I      intronic
chr20:35563333(-) A-I      intronic
chr20:35565381(-) A-I      intronic
chr20:35566490(-) A-I      intronic
chr20:35543411(-) A-I      intronic
chr20:35536771(-) A-I      intronic
chr20:35542957(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SAMHD1
chr20:35520977(-) A-G exon 3'UTR    21725310
chr20:35522708(-) A-G intron -    22484847
chr20:35523118(-) A-G intron -    22484847
chr20:35541894(-) A-G intron -    22484847
chr20:35543192(-) A-G intron -    22484847
chr20:35551322(-) A-G intron -    22484847
chr20:35565153(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SAMHD1
chr20:35518658-35518659(-) m6A 3'UTR       27773535//22608085
chr20:35518701-35518702(-) m6A 3'UTR       27773535//22608085
chr20:35518881-35518882(-) m6A 3'UTR       25456834//24981863//27773535//27371828//27773536//22608085
chr20:35518893-35518894(-) m6A 3'UTR       25456834//24981863//27773535//27371828//27773536//22608085
chr20:35519816-35519817(-) m6A 3'UTR       27773535
chr20:35520794-35520795(-) m6A 3'UTR       27773535
chr20:35520799-35520800(-) m6A 3'UTR       27773535
chr20:35520811-35520812(-) m6A 3'UTR       27773535
chr20:35520838-35520839(-) m6A 3'UTR       27773535
chr20:35520856-35520857(-) m6A 3'UTR       27773535
chr20:35520902-35520903(-) m6A 3'UTR       27773535
chr20:35520939-35520940(-) m6A 3'UTR       27773535
chr20:35520990-35520991(-) m6A 3'UTR       27773535
chr20:35520996-35520997(-) m6A 3'UTR       27773535
chr20:35521025-35521026(-) m6A 3'UTR       27773535
chr20:35521051-35521052(-) m6A 3'UTR       27773535
chr20:35533838-35533839(-) m6A CDS       27773535
chr20:35569465-35569466(-) Y 5'UTR//CDS       26075521
chr20:35579916-35579917(-) m6A CDS       27371828
chr20:35579935-35579936(-) m6A CDS       27371828
chr20:35579954-35579955(-) m6A CDS       27371828
chr20:35579975-35579976(-) m6A CDS       27371828
chr20:35579985-35579986(-) m6A CDS       27371828
chr20:35580134-35580135(-) m6A 5'UTR       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-143-5p
Exosome Breast milk     22211110
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
SAMHD1
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-143-5p
Interactor2: SAMHD1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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