Detail Information

Basic Information:


  VIRBase ID:  

HHID00064890

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-30c-2-3p:           NDUFA12:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-30c-2-3p NDUFA12
miRBase
Accession/Entrez ID		 MIMAT0004550 55967
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - B17.2//DAP13//MC1DN23

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-30c-2-3p
rs1262929323 chr6:71376964    A/G
rs1413659455 chr6:71376968    T/C
rs1421032991 chr6:71376975    C/A
rs1421032991 chr6:71376975    C/G
rs1488181071 chr6:71376967    G/T
rs747913643 chr6:71376976    C/A
rs760276048 chr6:71376974    G/C
rs775896072 chr6:71376969    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NDUFA12
chr12:95390899(-) A-I      intronic
chr12:95365977(-) A-I      intronic
chr12:95379341(-) A-I      intronic
chr12:95395751(-) A-I      intronic
chr12:95389438(-) A-I      intronic
chr12:95389425(-) A-I      intronic
chr12:95384940(-) A-I      intronic
chr12:95389860(-) A-I      intronic
chr12:95369607(-) A-I      intronic
chr12:95395660(-) A-I      intronic
chr12:95367777(-) A-I      intronic
chr12:95395595(-) A-I      intronic
chr12:95389818(-) A-I      intronic
chr12:95389812(-) A-I      intronic
chr12:95389450(-) A-I      intronic
chr12:95395645(-) A-I      intronic
chr12:95384259(-) A-I      intronic
chr12:95366473(-) A-I      intronic
chr12:95379356(-) A-I      intronic
chr12:95374980(-) A-I      intronic
chr12:95379340(-) A-I      intronic
chr12:95384817(-) A-I      intronic
chr12:95375023(-) A-I      intronic
chr12:95395161(-) A-I      intronic
chr12:95375034(-) A-I      intronic
chr12:95369714(-) A-I      intronic
chr12:95394960(-) A-I      intronic
chr12:95375040(-) A-I      intronic
chr12:95389483(-) A-I      intronic
chr12:95389485(-) A-I      intronic
chr12:95384264(-) A-I      intronic
chr12:95365946(-) A-I      intronic
chr12:95396095(-) A-I      intronic
chr12:95385241(-) A-I      intronic
chr12:95365837(-) A-I      intronic
chr12:95390934(-) A-I      intronic
chr12:95384464(-) A-I      intronic
chr12:95394999(-) A-I      intronic
chr12:95384406(-) A-I      intronic
chr12:95365791(-) A-I      intronic
chr12:95389406(-) A-I      intronic
chr12:95395321(-) A-I      intronic
chr12:95395373(-) A-I      intronic
chr12:95396053(-) A-I      intronic
chr12:95385489(-) A-I      intronic
chr12:95389950(-) A-I      intronic
chr12:95365953(-) A-I      intronic
chr12:95385260(-) A-I      intronic
chr12:95390154(-) A-I      intronic
chr12:95389901(-) A-I      intronic
chr12:95365810(-) A-I      intronic
chr12:95384291(-) A-I      intronic
chr12:95369706(-) A-I      intronic
chr12:95389421(-) A-I      intronic
chr12:95390411(-) A-I      intronic
chr12:95395752(-) A-I      intronic
chr12:95389840(-) A-I      intronic
chr12:95387824(-) A-I      intronic
chr12:95384486(-) A-I      intronic
chr12:95365950(-) A-I      intronic
chr12:95395309(-) A-I      intronic
chr12:95395618(-) A-I      intronic
chr12:95395344(-) A-I      intronic
chr12:95378588(-) A-I      intronic
chr12:95394982(-) A-I      intronic
chr12:95365823(-) A-I      intronic
chr12:95390149(-) A-I      intronic
chr12:95365985(-) A-I      intronic
chr12:95365929(-) A-I      intronic
chr12:95387634(-) A-I      intronic
chr12:95389872(-) A-I      intronic
chr12:95366468(-) A-I      intronic
chr12:95384480(-) A-I      intronic
chr12:95387850(-) A-I      intronic
chr12:95369700(-) A-I      intronic
chr12:95390900(-) A-I      intronic
chr12:95390223(-) A-I      intronic
chr12:95389976(-) A-I      intronic
chr12:95390216(-) A-I      intronic
chr12:95390251(-) A-I      intronic
chr12:95384803(-) A-I      intronic
chr12:95384337(-) A-I      intronic
chr12:95395139(-) A-I      intronic
chr12:95371196(-) A-I      intronic
chr12:95390882(-) A-I      intronic
chr12:95390201(-) A-I      intronic
chr12:95390929(-) A-I      intronic
chr12:95390222(-) A-I      intronic
chr12:95389902(-) A-I      intronic
chr12:95389889(-) A-I      intronic
chr12:95390944(-) A-I      intronic
chr12:95384815(-) A-I      intronic
chr12:95375141(-) A-I      intronic
chr12:95395619(-) A-I      intronic
chr12:95390905(-) A-I      intronic
chr12:95390168(-) A-I      intronic
chr12:95384439(-) A-I      intronic
chr12:95369595(-) A-I      intronic
chr12:95389402(-) A-I      intronic
chr12:95368027(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NDUFA12
chr12:95389483(-) A-G intron -    22484847
chr12:95389485(-) A-G intron -    22484847
chr12:95390934(-) A-G intron -    22484847
chr12:95365950(-) A-G intron -    22484847
chr12:95384337(-) A-G intron -    22484847
chr12:95384464(-) A-G intron -    22484847
chr12:95385489(-) A-G intron -    22484847
chr12:95387634(-) A-G intron -    22484847
chr12:95389406(-) A-G intron -    22484847
chr12:95389421(-) A-G intron -    22484847
chr12:95389901(-) A-G intron -    22484847
chr12:95389950(-) A-G intron -    22484847
chr12:95389976(-) A-G intron -    22484847
chr12:95390135(-) C-T intron -    22484847
chr12:95390136(-) T-G intron -    22484847
chr12:95390162(-) G-A intron -    22484847
chr12:95390201(-) A-G intron -    22484847
chr12:95390222(-) A-G intron -    22484847
chr12:95390929(-) A-G intron -    22484847
chr12:95390944(-) A-G intron -    22484847
chr12:95395309(-) A-G intron -    22484847
chr12:95395344(-) A-G intron -    22484847
chr12:95395619(-) A-G intron -    22484847
chr12:95395752(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NDUFA12
chr12:95365193-95365194(-) m6A 3'UTR//exon//intron       24284625//22608085
chr12:95365202-95365203(-) m6A 3'UTR//CDS//exon//intron       24284625//22608085
chr12:95365212-95365213(-) m6A 3'UTR//CDS//exon//intron       24284625//22608085
chr12:95365287-95365288(-) m6A 3'UTR//CDS//exon//intron       24284625
chr12:95365318-95365319(-) m6A 3'UTR//CDS//exon//intron       24284625
chr12:95396531-95396532(-) m6A CDS//intron       27773535
chr12:95396546-95396547(-) m6A CDS//intron       27773535
chr12:95396558-95396559(-) m6A CDS//intron       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-30c-2-3p
Exosome B cell line (Raji)|Jurkat-derived T cell line (J77cl20)     21505438
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Serum     24797360
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Cell line (HEK-293|HeLa)     22984580
NDUFA12
Exosome Blood     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-30c-2-3p
Gemcitabine 60750 Drug interaction    RC00006870
Eloxatine 5310940 Drug interaction    RC00006871
5-Fluorouracil 3385 Drug interaction    RC00006869
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-30c-2-3p
Cisplatin 5702198       27506865

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-30c-2-3p
Interactor2: NDUFA12

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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