Basic Information:

  VIRBase ID:  

HHID00064886

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-30c-2-3p:  MIMAT0004550          TASOR2:  NR_135800     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-30c-2-3p	TASOR2
miRBase Accession/Entrez ID	MIMAT0004550	54906
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	bA318E3.2//C10orf18//FAM208B

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-30c-2-3p	rs1262929323 chr6:71376964    A/G rs1413659455 chr6:71376968    T/C rs1421032991 chr6:71376975    C/A rs1421032991 chr6:71376975    C/G rs1488181071 chr6:71376967    G/T rs747913643 chr6:71376976    C/A rs760276048 chr6:71376974    G/C rs775896072 chr6:71376969    A/G

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TASOR2	chr10:5760512(+) A-I      intronic chr10:5760708(+) A-I      intronic chr10:5758622(+) A-I      intronic chr10:5748873(+) A-I      intronic chr10:5761505(+) A-I      intronic chr10:5761517(+) A-I      intronic chr10:5796116(+) A-I      intronic chr10:5774621(+) A-I      intronic chr10:5764891(+) A-I      intronic chr10:5758779(+) A-I      intronic chr10:5746001(+) A-I      intronic chr10:5731310(+) A-I      intronic chr10:5765063(+) A-I      intronic chr10:5765065(+) A-I      intronic chr10:5765076(+) A-I      intronic chr10:5765194(+) A-I      intronic chr10:5765270(+) A-I      intronic chr10:5745673(+) A-I      intronic chr10:5786854(+) A-I      intronic chr10:5796403(+) A-I      intronic chr10:5796422(+) A-I      intronic chr10:5773412(+) A-I      intronic chr10:5765203(+) A-I      intronic chr10:5773416(+) A-I      intronic chr10:5773417(+) A-I      intronic chr10:5775215(+) A-I      intronic chr10:5786731(+) A-I      intronic chr10:5775340(+) A-I      intronic chr10:5730395(+) A-I      intronic chr10:5796888(+) A-I      intronic chr10:5775350(+) A-I      intronic chr10:5775380(+) A-I      intronic chr10:5776723(+) A-I      intronic chr10:5776953(+) A-I      intronic chr10:5778234(+) A-I      intronic chr10:5796988(+) A-I      intronic chr10:5797302(+) A-I      intronic chr10:5796452(+) A-I      intronic chr10:5797371(+) A-I      intronic chr10:5778238(+) A-I      intronic chr10:5778260(+) A-I      intronic chr10:5778261(+) A-I      intronic chr10:5786782(+) A-I      intronic chr10:5765217(+) A-I      intronic chr10:5797385(+) A-I      intronic chr10:5786853(+) A-I      intronic chr10:5787533(+) A-I      intronic chr10:5796518(+) A-I      intronic chr10:5729528(+) A-I      intronic chr10:5796482(+) A-I      intronic chr10:5797738(+) A-I      intronic chr10:5796492(+) A-I      intronic chr10:5765229(+) A-I      intronic chr10:5748741(+) A-I      intronic chr10:5796959(+) A-I      intronic chr10:5797389(+) A-I      intronic chr10:5748770(+) A-I      intronic chr10:5748808(+) A-I      intronic chr10:5750904(+) A-I      intronic chr10:5787661(+) A-I      intronic chr10:5764818(+) A-I      intronic chr10:5748886(+) A-I      intronic chr10:5760650(+) A-I      intronic chr10:5760671(+) A-I      intronic chr10:5748845(+) A-I      intronic chr10:5761380(+) A-I      intronic chr10:5733995(+) A-I      intronic chr10:5761410(+) A-I      intronic chr10:5750900(+) A-I      intronic chr10:5761445(+) A-I      intronic chr10:5761471(+) A-I      intronic chr10:5764146(+) A-I      intronic chr10:5746067(+) A-I      intronic chr10:5748804(+) A-I      intronic chr10:5764163(+) A-I      intronic chr10:5764928(+) A-I      intronic chr10:5758716(+) A-I      intronic chr10:5787566(+) A-I      intronic chr10:5778470(+) A-I      intronic chr10:5778128(+) A-I      intronic chr10:5738591(+) A-I      intronic chr10:5764184(+) A-I      intronic chr10:5764379(+) A-I      intronic chr10:5796110(+) A-I      intronic chr10:5730839(+) A-I      intronic chr10:5730415(+) A-I      intronic chr10:5764382(+) A-I      intronic chr10:5729662(+) A-I      intronic chr10:5730292(+) A-I      intronic chr10:5730315(+) A-I      intronic chr10:5730324(+) A-I      intronic chr10:5730326(+) A-I      intronic chr10:5730330(+) A-I      intronic chr10:5746034(+) A-I      intronic chr10:5730332(+) A-I      intronic chr10:5730759(+) A-I      intronic chr10:5796113(+) A-I      intronic chr10:5730785(+) A-I      intronic chr10:5746076(+) A-I      intronic chr10:5730819(+) A-I      intronic chr10:5795465(+) A-I      intronic chr10:5730855(+) A-I      intronic chr10:5730868(+) A-I      intronic chr10:5730907(+) A-I      intronic chr10:5730915(+) A-I      intronic chr10:5796115(+) A-I      intronic chr10:5764761(+) A-I      intronic chr10:5731318(+) A-I      intronic chr10:5764784(+) A-I      intronic chr10:5745498(+) A-I      intronic chr10:5745506(+) A-I      intronic chr10:5745596(+) A-I      intronic chr10:5745606(+) A-I      intronic chr10:5745622(+) A-I      intronic chr10:5745632(+) A-I      intronic chr10:5787587(+) A-I      intronic chr10:5796118(+) A-I      intronic chr10:5745728(+) A-I      intronic chr10:5746035(+) A-I      intronic chr10:5746107(+) A-I      intronic chr10:5764815(+) A-I      intronic chr10:5748719(+) A-I      intronic chr10:5796121(+) A-I      intronic chr10:5796112(+) A-I      intronic chr10:5789575(+) A-I      Syn:Glu->Glu chr10:5775213(+) A-I      intronic chr10:5796117(+) A-I      intronic chr10:5764699(+) A-I      intronic chr10:5796954(+) A-I      intronic chr10:5764813(+) A-I      intronic chr10:5730265(+) A-I      intronic chr10:5729672(+) A-I      intronic chr10:5787622(+) A-I      intronic chr10:5745908(+) A-I      intronic chr10:5730314(+) A-I      intronic chr10:5750782(+) A-I      intronic chr10:5764821(+) A-I      intronic chr10:5730211(+) A-I      intronic chr10:5760520(+) A-I      intronic chr10:5738378(+) A-I      intronic chr10:5730933(+) A-I      intronic chr10:5731452(+) A-I      intronic chr10:5778486(+) A-I      intronic chr10:5748887(+) A-I      intronic chr10:5796162(+) A-I      intronic chr10:5796819(+) A-I      intronic chr10:5764715(+) A-I      intronic chr10:5760601(+) A-I      intronic chr10:5746072(+) A-I      intronic chr10:5748711(+) A-I      intronic chr10:5796086(+) A-I      intronic chr10:5764931(+) A-I      intronic chr10:5796453(+) A-I      intronic chr10:5797387(+) A-I      intronic chr10:5757723(+) A-I      intronic chr10:5765221(+) A-I      intronic chr10:5758780(+) A-I      intronic chr10:5760628(+) A-I      intronic chr10:5730206(+) A-I      intronic chr10:5750831(+) A-I      intronic chr10:5746053(+) A-I      intronic chr10:5760575(+) A-I      intronic chr10:5748779(+) A-I      intronic chr10:5761409(+) A-I      intronic chr10:5748930(+) A-I      intronic chr10:5748810(+) A-I      intronic chr10:5758702(+) A-I      intronic chr10:5750739(+) A-I      intronic chr10:5750758(+) A-I      intronic chr10:5748765(+) A-I      intronic chr10:5730289(+) A-I      intronic chr10:5730236(+) A-I      intronic chr10:5748813(+) A-I      intronic chr10:5750886(+) A-I      intronic chr10:5730851(+) A-I      intronic chr10:5757732(+) A-I      intronic chr10:5750862(+) A-I      intronic chr10:5795492(+) A-I      intronic chr10:5748771(+) A-I      intronic chr10:5786319(+) A-I      intronic chr10:5730771(+) A-I      intronic chr10:5730732(+) A-I      intronic chr10:5730766(+) A-I      intronic chr10:5796480(+) A-I      intronic chr10:5778129(+) A-I      intronic chr10:5730302(+) A-I      intronic chr10:5795584(+) A-I      intronic chr10:5730723(+) A-I      intronic chr10:5746108(+) A-I      intronic chr10:5796103(+) A-I      intronic chr10:5748782(+) A-I      intronic chr10:5750939(+) A-I      intronic chr10:5730411(+) A-I      intronic chr10:5746000(+) A-I      intronic chr10:5733973(+) A-I      intronic chr10:5795570(+) A-I      intronic chr10:5758700(+) A-I      intronic chr10:5796182(+) A-I      intronic chr10:5757735(+) A-I      intronic chr10:5748846(+) A-I      intronic chr10:5745924(+) A-I      intronic chr10:5730257(+) A-I      intronic chr10:5796013(+) A-I      intronic chr10:5745931(+) A-I      intronic chr10:5786844(+) A-I      intronic chr10:5748806(+) A-I      intronic chr10:5796205(+) A-I      intronic chr10:5764709(+) A-I      intronic chr10:5731448(+) A-I      intronic chr10:5730832(+) A-I      intronic chr10:5797386(+) A-I      intronic chr10:5757745(+) A-I      intronic chr10:5730318(+) A-I      intronic chr10:5786695(+) A-I      intronic chr10:5748689(+) A-I      intronic chr10:5761418(+) A-I      intronic chr10:5729563(+) A-I      intronic chr10:5796818(+) A-I      intronic chr10:5730288(+) A-I      intronic chr10:5760456(+) A-I      intronic chr10:5778452(+) A-I      intronic chr10:5761375(+) A-I      intronic chr10:5748710(+) A-I      intronic chr10:5750830(+) A-I      intronic chr10:5796114(+) A-I      intronic chr10:5787596(+) A-I      intronic chr10:5745739(+) A-I      intronic chr10:5796077(+) A-I      intronic chr10:5765225(+) A-I      intronic chr10:5748819(+) A-I      intronic chr10:5750806(+) A-I      intronic chr10:5746040(+) A-I      intronic chr10:5738582(+) A-I      intronic chr10:5760602(+) A-I      intronic chr10:5764851(+) A-I      intronic chr10:5750804(+) A-I      intronic chr10:5750846(+) A-I      intronic chr10:5750885(+) A-I      intronic chr10:5749024(+) A-I      intronic chr10:5729054(+) A-I      intronic chr10:5741416(+) A-I      intronic chr10:5764941(+) A-I      intronic chr10:5739908(+) A-I      intronic chr10:5748780(+) A-I      intronic chr10:5764850(+) A-I      intronic chr10:5739909(+) A-I      intronic chr10:5730401(+) A-I      intronic chr10:5729060(+) A-I      intronic chr10:5739925(+) A-I      intronic chr10:5746031(+) A-I      intronic chr10:5729129(+) A-I      intronic

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-30c-2-3p	Exosome B cell line (Raji)|Jurkat-derived T cell line (J77cl20)     21505438 Exosome Plasma     23663360 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Seminal plasma     23539611 Microvesicle Serum     24797360 Microvesicle Fibroblasts|Mesenchymal stem cells     - Mitochondrion Cell line (HEK-293|HeLa)     22984580
	TASOR2	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID	Function	Link
RNAInter	hsa-miR-30c-2-3p	Gemcitabine 60750 Drug interaction    RC00006870 Eloxatine 5310940 Drug interaction    RC00006871 5-Fluorouracil 3385 Drug interaction    RC00006869

Resource	Symbol	Drug Name	PubChem ID	PMID
NoncoRNA	hsa-miR-30c-2-3p	Cisplatin 5702198       27506865

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-30c-2-3p
Interactor2: TASOR2

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.