Detail Information

Basic Information:


  VIRBase ID:  

HHID00064885

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-30c-2-3p:           OTUD4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-30c-2-3p OTUD4
miRBase
Accession/Entrez ID		 MIMAT0004550 54726
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - DUBA6//HIN1//HSHIN1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-30c-2-3p
rs1262929323 chr6:71376964    A/G
rs1413659455 chr6:71376968    T/C
rs1421032991 chr6:71376975    C/A
rs1421032991 chr6:71376975    C/G
rs1488181071 chr6:71376967    G/T
rs747913643 chr6:71376976    C/A
rs760276048 chr6:71376974    G/C
rs775896072 chr6:71376969    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR OTUD4
chr4:146072785(-) A-I      intronic
chr4:146097739(-) A-I      intronic
chr4:146097649(-) A-I      intronic
chr4:146090834(-) A-I      intronic
chr4:146090832(-) A-I      intronic
chr4:146090806(-) A-I      intronic
chr4:146090805(-) A-I      intronic
chr4:146097290(-) A-I      intronic
chr4:146097079(-) A-I      intronic
chr4:146095251(-) A-I      intronic
chr4:146092471(-) A-I      intronic
chr4:146092448(-) A-I      intronic
chr4:146092361(-) A-I      intronic
chr4:146090804(-) A-I      intronic
chr4:146090761(-) A-I      intronic
chr4:146090704(-) A-I      intronic
chr4:146089011(-) A-I      intronic
chr4:146088963(-) A-I      intronic
chr4:146073468(-) A-I      intronic
chr4:146087310(-) A-I      intronic
chr4:146073387(-) A-I      intronic
chr4:146087266(-) A-I      intronic
chr4:146087267(-) A-I      intronic
chr4:146087146(-) A-I      intronic
chr4:146090797(-) A-I      intronic
chr4:146087201(-) A-I      intronic
chr4:146086715(-) A-I      intronic
chr4:146073484(-) A-I      intronic
chr4:146087312(-) A-I      intronic
chr4:146087035(-) A-I      intronic
chr4:146088924(-) A-I      intronic
chr4:146055707(-) A-I      3'UTR
chr4:146096924(-) A-I      intronic
chr4:146096967(-) A-I      intronic
chr4:146086830(-) A-I      intronic
chr4:146086797(-) A-I      intronic
chr4:146096727(-) A-I      intronic
chr4:146086847(-) A-I      intronic
chr4:146096845(-) A-I      intronic
chr4:146090814(-) A-I      intronic
chr4:146086786(-) A-I      intronic
chr4:146088788(-) A-I      intronic
chr4:146086695(-) A-I      intronic
chr4:146086768(-) A-I      intronic
chr4:146086767(-) A-I      intronic
chr4:146086794(-) A-I      intronic
chr4:146096910(-) A-I      intronic
chr4:146086855(-) A-I      intronic
chr4:146096890(-) A-I      intronic
chr4:146086833(-) A-I      intronic
chr4:146086667(-) A-I      intronic
chr4:146086665(-) A-I      intronic
chr4:146086802(-) A-I      intronic
chr4:146086807(-) A-I      intronic
chr4:146086823(-) A-I      intronic
chr4:146096898(-) A-I      intronic
chr4:146086799(-) A-I      intronic
chr4:146086702(-) A-I      intronic
chr4:146086726(-) A-I      intronic
chr4:146096900(-) A-I      intronic
chr4:146086822(-) A-I      intronic
chr4:146086727(-) A-I      intronic
chr4:146086738(-) A-I      intronic
chr4:146096901(-) A-I      intronic
chr4:146086762(-) A-I      intronic
chr4:146086860(-) A-I      intronic
chr4:146096876(-) A-I      intronic
chr4:146086664(-) A-I      intronic
chr4:146086832(-) A-I      intronic
chr4:146096835(-) A-I      intronic
chr4:146086884(-) A-I      intronic
chr4:146090722(-) A-I      intronic
chr4:146086865(-) A-I      intronic
chr4:146092363(-) A-I      intronic
chr4:146087066(-) A-I      intronic
chr4:146097155(-) A-I      intronic
chr4:146073392(-) A-I      intronic
chr4:146072639(-) A-I      intronic
chr4:146095402(-) A-I      intronic
chr4:146086692(-) A-I      intronic
chr4:146073434(-) A-I      intronic
chr4:146095256(-) A-I      intronic
chr4:146090913(-) A-I      intronic
chr4:146097115(-) A-I      intronic
chr4:146092322(-) A-I      intronic
chr4:146097251(-) A-I      intronic
chr4:146092350(-) A-I      intronic
chr4:146078656(-) A-I      intronic
chr4:146079445(-) A-I      intronic
chr4:146096765(-) A-I      intronic
chr4:146096968(-) A-I      intronic
chr4:146092431(-) A-I      intronic
chr4:146087148(-) A-I      intronic
chr4:146090912(-) A-I      intronic
chr4:146087950(-) A-I      intronic
chr4:146092413(-) A-I      intronic
chr4:146092337(-) A-I      intronic
chr4:146073433(-) A-I      intronic
chr4:146096834(-) A-I      intronic
chr4:146087829(-) A-I      intronic
chr4:146094434(-) A-I      intronic
chr4:146090883(-) A-I      intronic
chr4:146097241(-) A-I      intronic
chr4:146092244(-) A-I      intronic
chr4:146094354(-) A-I      intronic
chr4:146094379(-) A-I      intronic
chr4:146096959(-) A-I      intronic
chr4:146097837(-) A-I      intronic
chr4:146097807(-) A-I      intronic
chr4:146088846(-) A-I      intronic
chr4:146097768(-) A-I      intronic
chr4:146092328(-) A-I      intronic
chr4:146087197(-) A-I      intronic
chr4:146095350(-) A-I      intronic
chr4:146097729(-) A-I      intronic
chr4:146072705(-) A-I      intronic
chr4:146090851(-) A-I      intronic
chr4:146087069(-) A-I      intronic
chr4:146095343(-) A-I      intronic
chr4:146072675(-) A-I      intronic
chr4:146087881(-) A-I      intronic
chr4:146092336(-) A-I      intronic
chr4:146073349(-) A-I      intronic
chr4:146092341(-) A-I      intronic
chr4:146083179(-) A-I      intronic
chr4:146087057(-) A-I      intronic
chr4:146095366(-) A-I      intronic
chr4:146090672(-) A-I      intronic
chr4:146087737(-) A-I      intronic
chr4:146083594(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED OTUD4
chr4:146092243(-) A-I intron -    15258596
chr4:146092244(-) A-I intron -    15258596
chr4:146092322(-) A-I intron -    15258596
chr4:146092336(-) A-I intron -    15258596
chr4:146092341(-) A-I intron -    15258596
chr4:146092350(-) A-I intron -    15258596
chr4:146092363(-) A-I intron -    15258596
chr4:146086664(-) A-I intron -    22028664
chr4:146086665(-) A-I intron -    22028664
chr4:146086667(-) A-I intron -    22028664
chr4:146086692(-) A-I intron -    22028664
chr4:146086695(-) A-I intron -    22028664
chr4:146086702(-) A-I intron -    22028664
chr4:146086726(-) A-I intron -    22028664
chr4:146086727(-) A-I intron -    22028664
chr4:146086735(-) A-I intron -    22028664
chr4:146086738(-) A-I intron -    22028664
chr4:146086758(-) A-I intron -    22028664
chr4:146086762(-) A-I intron -    22028664
chr4:146086767(-) A-I intron -    22028664
chr4:146086768(-) A-I intron -    22028664
chr4:146086786(-) A-I intron -    22028664
chr4:146086794(-) A-I intron -    22028664
chr4:146086797(-) A-I intron -    22028664
chr4:146086799(-) A-I intron -    22028664
chr4:146086802(-) A-I intron -    22028664
chr4:146086807(-) A-I intron -    22028664
chr4:146086822(-) A-I intron -    22028664
chr4:146086823(-) A-I intron -    22028664
chr4:146086828(-) A-I intron -    22028664
chr4:146086830(-) A-I intron -    22028664
chr4:146086832(-) A-I intron -    22028664
chr4:146086833(-) A-I intron -    22028664
chr4:146086847(-) A-I intron -    22028664
chr4:146086855(-) A-I intron -    22028664
chr4:146086860(-) A-I intron -    22028664
chr4:146086865(-) A-I intron -    22028664
chr4:146086884(-) A-I intron -    22028664
chr4:146072553(-) A-G intron -    22484847
chr4:146072675(-) A-G intron -    22484847
chr4:146072705(-) A-G intron -    22484847
chr4:146073429(-) A-G intron -    22484847
chr4:146073433(-) A-G intron -    22484847
chr4:146073434(-) A-G intron -    22484847
chr4:146073464(-) A-G intron -    22484847
chr4:146086692(-) A-G intron -    22484847
chr4:146086828(-) A-G intron -    22484847
chr4:146087066(-) A-G intron -    22484847
chr4:146087069(-) A-G intron -    22484847
chr4:146087197(-) A-G intron -    22484847
chr4:146087881(-) A-G intron -    22484847
chr4:146088788(-) A-G intron -    22484847
chr4:146090801(-) A-G intron -    22484847
chr4:146090883(-) A-G intron -    22484847
chr4:146092322(-) A-G intron -    22484847
chr4:146092328(-) A-G intron -    22484847
chr4:146092413(-) A-G intron -    22484847
chr4:146092454(-) A-G intron -    22484847
chr4:146094434(-) A-G intron -    22484847
chr4:146095402(-) A-G intron -    22484847
chr4:146097115(-) A-G intron -    22484847
chr4:146097155(-) A-G intron -    22484847
chr4:146097641(-) A-G intron -    22484847
chr4:146097729(-) A-G intron -    22484847
chr4:146097768(-) A-G intron -    22484847
chr4:146097807(-) A-G intron -    22484847
chr4:146097845(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase OTUD4
chr4:146058285-146058286(-) m6A 3'UTR//intron       24981863//27773535
chr4:146058300-146058301(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr4:146058426-146058427(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr4:146058435-146058436(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr4:146058440-146058441(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr4:146058485-146058486(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr4:146058497-146058498(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr4:146058550-146058551(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr4:146058593-146058594(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr4:146058701-146058702(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr4:146058790-146058791(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr4:146058872-146058873(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr4:146058928-146058929(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr4:146058952-146058953(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr4:146058976-146058977(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr4:146058986-146058987(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr4:146058992-146058993(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr4:146059006-146059007(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr4:146059020-146059021(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr4:146059099-146059100(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr4:146059117-146059118(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr4:146059172-146059173(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr4:146059397-146059398(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr4:146059474-146059475(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr4:146059508-146059509(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr4:146059568-146059569(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr4:146059612-146059613(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr4:146062738-146062739(-) m6A CDS//exon       27773535
chr4:146062752-146062753(-) m6A CDS//exon       27773535
chr4:146063354-146063355(-) m6A CDS//exon       27773535
chr4:146063369-146063370(-) m6A CDS//exon       27773535
chr4:146065112-146065113(-) m6A CDS//exon       24981863
chr4:146065118-146065119(-) m6A CDS//exon       24981863
chr4:146065139-146065140(-) m6A CDS//exon       24981863
chr4:146065467-146065468(-) m6A CDS//exon       24981863
chr4:146071969-146071970(-) m6A CDS//exon       27773535
chr4:146071984-146071985(-) m6A CDS//exon       27773535
chr4:146072012-146072013(-) m6A CDS//exon       27773535
chr4:146072042-146072043(-) m6A CDS//exon       -
chr4:146085345-146085346(-) Y CDS//exon       26075521
chr4:146101090-146101091(-) m6A CDS       27773536
chr4:146101133-146101134(-) m6A 5'UTR       27773536
chr4:146101279-146101280(-) m6A 5'UTR       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-30c-2-3p
Exosome B cell line (Raji)|Jurkat-derived T cell line (J77cl20)     21505438
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Serum     24797360
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Cell line (HEK-293|HeLa)     22984580
OTUD4
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-30c-2-3p
Gemcitabine 60750 Drug interaction    RC00006870
Eloxatine 5310940 Drug interaction    RC00006871
5-Fluorouracil 3385 Drug interaction    RC00006869
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-30c-2-3p
Cisplatin 5702198       27506865

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-30c-2-3p
Interactor2: OTUD4

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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