Detail Information

Basic Information:


  VIRBase ID:  

HHID00064496

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-29b-2-5p:           C12orf76:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-29b-2-5p C12orf76
miRBase
Accession/Entrez ID		 MIMAT0004515 400073
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-29b-2-5p
rs1389711693 chr1:207802500    C/A
rs200396959 chr1:207802497    C/T
rs971770488 chr1:207802503    T/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR C12orf76
chr12:110483656(-) A-I      intronic
chr12:110499525(-) A-I      intronic
chr12:110494321(-) A-I      intronic
chr12:110501538(-) A-I      intronic
chr12:110498018(-) A-I      intronic
chr12:110500051(-) A-I      intronic
chr12:110501273(-) A-I      intronic
chr12:110491797(-) A-I      intronic
chr12:110504055(-) A-I      intronic
chr12:110499876(-) A-I      intronic
chr12:110493831(-) A-I      intronic
chr12:110490138(-) A-I      intronic
chr12:110501296(-) A-I      intronic
chr12:110491192(-) A-I      intronic
chr12:110490200(-) A-I      intronic
chr12:110496461(-) A-I      intronic
chr12:110499427(-) A-I      intronic
chr12:110496298(-) A-I      intronic
chr12:110500927(-) A-I      intronic
chr12:110499969(-) A-I      intronic
chr12:110495830(-) A-I      intronic
chr12:110489502(-) A-I      intronic
chr12:110490280(-) A-I      intronic
chr12:110491121(-) A-I      intronic
chr12:110501178(-) A-I      intronic
chr12:110498596(-) A-I      intronic
chr12:110493181(-) A-I      intronic
chr12:110500513(-) A-I      intronic
chr12:110490164(-) A-I      intronic
chr12:110493116(-) A-I      intronic
chr12:110491632(-) A-I      intronic
chr12:110491854(-) A-I      intronic
chr12:110499947(-) A-I      intronic
chr12:110491717(-) A-I      intronic
chr12:110491767(-) A-I      intronic
chr12:110491078(-) A-I      intronic
chr12:110493188(-) A-I      intronic
chr12:110496348(-) A-I      intronic
chr12:110493872(-) A-I      intronic
chr12:110480697(-) A-I      intronic
chr12:110495812(-) A-I      intronic
chr12:110485272(-) A-I      intronic
chr12:110485866(-) A-I      intronic
chr12:110483203(-) A-I      intronic
chr12:110485894(-) A-I      intronic
chr12:110489278(-) A-I      intronic
chr12:110490148(-) A-I      intronic
chr12:110489858(-) A-I      intronic
chr12:110489872(-) A-I      intronic
chr12:110491228(-) A-I      intronic
chr12:110491221(-) A-I      intronic
chr12:110490128(-) A-I      intronic
chr12:110490201(-) A-I      intronic
chr12:110485884(-) A-I      intronic
chr12:110490763(-) A-I      intronic
chr12:110490983(-) A-I      intronic
chr12:110499974(-) A-I      intronic
chr12:110489862(-) A-I      intronic
chr12:110494371(-) A-I      intronic
chr12:110490915(-) A-I      intronic
chr12:110500055(-) A-I      intronic
chr12:110499850(-) A-I      intronic
chr12:110480742(-) A-I      intronic
chr12:110489402(-) A-I      intronic
chr12:110491842(-) A-I      intronic
chr12:110505470(-) A-I      5'UTR
chr12:110492751(-) A-I      intronic
chr12:110490177(-) A-I      intronic
chr12:110490914(-) A-I      intronic
chr12:110489911(-) A-I      intronic
chr12:110491060(-) A-I      intronic
chr12:110494386(-) A-I      intronic
chr12:110499480(-) A-I      intronic
chr12:110499614(-) A-I      intronic
chr12:110490091(-) A-I      intronic
chr12:110490067(-) A-I      intronic
chr12:110491047(-) A-I      intronic
chr12:110498718(-) A-I      intronic
chr12:110490036(-) A-I      intronic
chr12:110489261(-) A-I      intronic
chr12:110503227(-) A-I      intronic
chr12:110491745(-) A-I      intronic
chr12:110490180(-) A-I      intronic
chr12:110485920(-) A-I      intronic
chr12:110503155(-) A-I      intronic
chr12:110491794(-) A-I      intronic
chr12:110491811(-) A-I      intronic
chr12:110499985(-) A-I      intronic
chr12:110490034(-) A-I      intronic
chr12:110500924(-) A-I      intronic
chr12:110498788(-) A-I      intronic
chr12:110490183(-) A-I      intronic
chr12:110489869(-) A-I      intronic
chr12:110500467(-) A-I      intronic
chr12:110489396(-) A-I      intronic
chr12:110501695(-) A-I      intronic
chr12:110489503(-) A-I      intronic
chr12:110491785(-) A-I      intronic
chr12:110496322(-) A-I      intronic
chr12:110499824(-) A-I      intronic
chr12:110501258(-) A-I      intronic
chr12:110493794(-) A-I      intronic
chr12:110491298(-) A-I      intronic
chr12:110485406(-) A-I      intronic
chr12:110495676(-) A-I      intronic
chr12:110490234(-) A-I      intronic
chr12:110493130(-) A-I      intronic
chr12:110499438(-) A-I      intronic
chr12:110499903(-) A-I      intronic
chr12:110496469(-) A-I      intronic
chr12:110490144(-) A-I      intronic
chr12:110489809(-) A-I      intronic
chr12:110489790(-) A-I      intronic
chr12:110499875(-) A-I      intronic
chr12:110501460(-) A-I      intronic
chr12:110489411(-) A-I      intronic
chr12:110503202(-) A-I      intronic
chr12:110493082(-) A-I      intronic
chr12:110491099(-) A-I      intronic
chr12:110491164(-) A-I      intronic
chr12:110491828(-) A-I      intronic
chr12:110501626(-) A-I      intronic
chr12:110491138(-) A-I      intronic
chr12:110499620(-) A-I      intronic
chr12:110498026(-) A-I      intronic
chr12:110490096(-) A-I      intronic
chr12:110499961(-) A-I      intronic
chr12:110490242(-) A-I      intronic
chr12:110490002(-) A-I      intronic
chr12:110499613(-) A-I      intronic
chr12:110491740(-) A-I      intronic
chr12:110498757(-) A-I      intronic
chr12:110503248(-) A-I      intronic
chr12:110489804(-) A-I      intronic
chr12:110494384(-) A-I      intronic
chr12:110495786(-) A-I      intronic
chr12:110503218(-) A-I      intronic
chr12:110501870(-) A-I      intronic
chr12:110494387(-) A-I      intronic
chr12:110499371(-) A-I      intronic
chr12:110499843(-) A-I      intronic
chr12:110490160(-) A-I      intronic
chr12:110492705(-) A-I      intronic
chr12:110503169(-) A-I      intronic
chr12:110485273(-) A-I      intronic
chr12:110491671(-) A-I      intronic
chr12:110499906(-) A-I      intronic
chr12:110491668(-) A-I      intronic
chr12:110491833(-) A-I      intronic
chr12:110489405(-) A-I      intronic
chr12:110491626(-) A-I      intronic
chr12:110491878(-) A-I      intronic
chr12:110485276(-) A-I      intronic
chr12:110503208(-) A-I      intronic
chr12:110483725(-) A-I      intronic
chr12:110490124(-) A-I      intronic
chr12:110500479(-) A-I      intronic
chr12:110494330(-) A-I      intronic
chr12:110499372(-) A-I      intronic
chr12:110497948(-) A-I      intronic
chr12:110491732(-) A-I      intronic
chr12:110500522(-) A-I      intronic
chr12:110490053(-) A-I      intronic
chr12:110489324(-) A-I      intronic
chr12:110497919(-) A-I      intronic
chr12:110500723(-) A-I      intronic
chr12:110501706(-) A-I      intronic
chr12:110503959(-) A-I      intronic
chr12:110501174(-) A-I      intronic
chr12:110500842(-) A-I      intronic
chr12:110491141(-) A-I      intronic
chr12:110497869(-) A-I      intronic
chr12:110493766(-) A-I      intronic
chr12:110501493(-) A-I      intronic
chr12:110497992(-) A-I      intronic
chr12:110503385(-) A-I      intronic
chr12:110490178(-) A-I      intronic
chr12:110480700(-) A-I      intronic
chr12:110503226(-) A-I      intronic
chr12:110493106(-) A-I      intronic
chr12:110489343(-) A-I      intronic
chr12:110491644(-) A-I      intronic
chr12:110490028(-) A-I      intronic
chr12:110489509(-) A-I      intronic
chr12:110499457(-) A-I      intronic
chr12:110490181(-) A-I      intronic
chr12:110497944(-) A-I      intronic
chr12:110490961(-) A-I      intronic
chr12:110496394(-) A-I      intronic
chr12:110500860(-) A-I      intronic
chr12:110491765(-) A-I      intronic
chr12:110501630(-) A-I      intronic
chr12:110490430(-) A-I      intronic
chr12:110501242(-) A-I      intronic
chr12:110493895(-) A-I      intronic
chr12:110493826(-) A-I      intronic
chr12:110501196(-) A-I      intronic
chr12:110483976(-) A-I      intronic
chr12:110491218(-) A-I      intronic
chr12:110500841(-) A-I      intronic
chr12:110491874(-) A-I      intronic
chr12:110493839(-) A-I      intronic
chr12:110493182(-) A-I      intronic
chr12:110492728(-) A-I      intronic
chr12:110501374(-) A-I      intronic
chr12:110496345(-) A-I      intronic
chr12:110493802(-) A-I      intronic
chr12:110505493(-) A-I      5'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED C12orf76
chr12:110492705(-) A-G intron -    22484847
chr12:110493826(-) A-G intron -    22484847
chr12:110494387(-) A-G intron -    22484847
chr12:110500055(-) A-G intron -    22484847
chr12:110481669(-) G-T intron -    22484847
chr12:110485276(-) A-G intron -    22484847
chr12:110485884(-) A-G intron -    22484847
chr12:110493839(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase C12orf76
chr12:110465943-110465944(-) m6A 3'UTR       27773535
chr12:110466022-110466023(-) m6A 3'UTR       27773535
chr12:110466031-110466032(-) m6A 3'UTR       24981863//27773535
chr12:110466149-110466150(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr12:110466177-110466178(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr12:110466213-110466214(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr12:110466302-110466303(-) m6A 3'UTR       24284625//27773535//22608085
chr12:110479491-110479492(-) m6A 3'UTR//intron       24981863//27773535
chr12:110479507-110479508(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr12:110479544-110479545(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr12:110479589-110479590(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr12:110479768-110479769(-) m6A 3'UTR//intron       27773535//22608085
chr12:110479785-110479786(-) m6A 3'UTR//intron       27773535//22608085
chr12:110479798-110479799(-) m6A 3'UTR//intron       27773535//22608085
chr12:110479836-110479837(-) m6A 3'UTR//intron       24284625//27773535//22608085
chr12:110479851-110479852(-) m6A 3'UTR//intron       24284625//27773535//22608085
chr12:110479880-110479881(-) m6A 3'UTR//intron       24284625//27773535//22608085
chr12:110479932-110479933(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22608085
chr12:110480019-110480020(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22608085
chr12:110480030-110480031(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22608085
chr12:110480063-110480064(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22608085
chr12:110480095-110480096(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22608085
chr12:110480101-110480102(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22608085
chr12:110480170-110480171(-) m6A 3'UTR//CDS//exon//intron       24284625//24981863//27773535//22608085
chr12:110486432-110486433(-) m6A 5'UTR//intron       -
chr12:110486438-110486439(-) m6A 5'UTR//intron       -
chr12:110486460-110486461(-) m6A 5'UTR//intron       -
chr12:110486490-110486491(-) m6A 5'UTR//intron       -
chr12:110487291-110487292(-) m6A 3'UTR//intron       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-29b-2-5p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Skeletal muscle myoblasts     21637849
C12orf76
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-29b-2-5p
Interactor2: C12orf76

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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