Detail Information

Basic Information:


  VIRBase ID:  

HHID00064483

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-29b-2-5p:           BMT2:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-29b-2-5p BMT2
miRBase
Accession/Entrez ID		 MIMAT0004515 154743
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - C7orf60//SAMTOR

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-29b-2-5p
rs1389711693 chr1:207802500    C/A
rs200396959 chr1:207802497    C/T
rs971770488 chr1:207802503    T/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR BMT2
chr7:112497348(-) A-I      intronic
chr7:112497341(-) A-I      intronic
chr7:112472336(-) A-I      intronic
chr7:112502227(-) A-I      intronic
chr7:112501440(-) A-I      intronic
chr7:112527112(-) A-I      intronic
chr7:112546859(-) A-I      intronic
chr7:112546809(-) A-I      intronic
chr7:112546805(-) A-I      intronic
chr7:112546804(-) A-I      intronic
chr7:112546791(-) A-I      intronic
chr7:112533813(-) A-I      intronic
chr7:112527063(-) A-I      intronic
chr7:112505930(-) A-I      intronic
chr7:112505917(-) A-I      intronic
chr7:112505240(-) A-I      intronic
chr7:112472361(-) A-I      intronic
chr7:112505054(-) A-I      intronic
chr7:112505987(-) A-I      intronic
chr7:112504931(-) A-I      intronic
chr7:112502228(-) A-I      intronic
chr7:112533809(-) A-I      intronic
chr7:112530995(-) A-I      intronic
chr7:112502198(-) A-I      intronic
chr7:112502162(-) A-I      intronic
chr7:112555039(-) A-I      intronic
chr7:112471707(-) A-I      intronic
chr7:112472329(-) A-I      intronic
chr7:112506007(-) A-I      intronic
chr7:112502201(-) A-I      intronic
chr7:112531003(-) A-I      intronic
chr7:112490196(-) A-I      intronic
chr7:112496469(-) A-I      intronic

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-29b-2-5p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Skeletal muscle myoblasts     21637849
BMT2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-29b-2-5p
Interactor2: BMT2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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