Detail Information

Basic Information:


  VIRBase ID:  

HHID00064482

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-29b-2-5p:           MBLAC2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-29b-2-5p MBLAC2
miRBase
Accession/Entrez ID		 MIMAT0004515 153364
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-29b-2-5p
rs1389711693 chr1:207802500    C/A
rs200396959 chr1:207802497    C/T
rs971770488 chr1:207802503    T/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MBLAC2
chr5:89764982(-) A-I      intronic
chr5:89764977(-) A-I      intronic
chr5:89761529(-) A-I      intronic
chr5:89759194(-) A-I      intronic
chr5:89762737(-) A-I      intronic
chr5:89765039(-) A-I      intronic
chr5:89760220(-) A-I      intronic
chr5:89760363(-) A-I      intronic
chr5:89760350(-) A-I      intronic
chr5:89762842(-) A-I      intronic
chr5:89761656(-) A-I      intronic
chr5:89760289(-) A-I      intronic
chr5:89761643(-) A-I      intronic
chr5:89761475(-) A-I      intronic
chr5:89762832(-) A-I      intronic
chr5:89760340(-) A-I      intronic
chr5:89762939(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED MBLAC2
chr5:89760350(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MBLAC2
chr5:89755308-89755309(-) m6A 3'UTR       24981863
chr5:89755313-89755314(-) m6A 3'UTR       24981863
chr5:89755338-89755339(-) m6A 3'UTR       24981863
chr5:89755397-89755398(-) m6A 3'UTR       24981863
chr5:89755417-89755418(-) m6A 3'UTR       24981863
chr5:89755503-89755504(-) m6A 3'UTR       24981863//27773535
chr5:89755531-89755532(-) m6A 3'UTR       24981863//27773535
chr5:89755572-89755573(-) m6A 3'UTR       24981863//27773535
chr5:89755590-89755591(-) m6A 3'UTR       24981863//27773535
chr5:89755606-89755607(-) m6A 3'UTR       24981863//27773535
chr5:89755671-89755672(-) m6A 3'UTR       24981863//27773535
chr5:89755746-89755747(-) m6A 3'UTR       27773535
chr5:89756994-89756995(-) m6A CDS       27773535
chr5:89757164-89757165(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr5:89757192-89757193(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr5:89757281-89757282(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr5:89757343-89757344(-) m6A CDS       24284625//24981863//27773535//22608085
chr5:89768291-89768292(-) m6A 3'UTR//intron       24284625//27773535//22608085
chr5:89769273-89769274(-) m6A 3'UTR//intron       24284625//25456834//27773535//22608085
chr5:89769351-89769352(-) m6A 3'UTR//intron       24284625//25456834//27773535//22608085
chr5:89769456-89769457(-) m6A 3'UTR//intron       24284625
chr5:89769502-89769503(-) m6A 3'UTR//intron       24284625
chr5:89769576-89769577(-) m6A CDS//intron       24284625//25456834//22608085
chr5:89769601-89769602(-) m6A CDS//intron       24284625//25456834//27371828//22608085
chr5:89769701-89769702(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr5:89769763-89769764(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr5:89769774-89769775(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr5:89769915-89769916(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr5:89770154-89770155(-) m6A 5'UTR       24284625//25456834//24981863//27371828//27773536//22608085
chr5:89770168-89770169(-) m6A 5'UTR       24284625//25456834//24981863//27371828//27773536//22608085
chr5:89770202-89770203(-) m6A 5'UTR       24284625//24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-29b-2-5p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Skeletal muscle myoblasts     21637849
MBLAC2
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-29b-2-5p
Interactor2: MBLAC2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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