Detail Information

Basic Information:


  VIRBase ID:  

HHID00064480

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-29b-2-5p:           CCDC117:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-29b-2-5p CCDC117
miRBase
Accession/Entrez ID		 MIMAT0004515 150275
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - dJ366L4.1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-29b-2-5p
rs1389711693 chr1:207802500    C/A
rs200396959 chr1:207802497    C/T
rs971770488 chr1:207802503    T/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CCDC117
chr22:29183336(+) A-I      3'UTR
chr22:29183327(+) A-I      3'UTR
chr22:29183277(+) A-I      3'UTR
chr22:29170291(+) A-I      intronic
chr22:29170317(+) A-I      intronic
chr22:29177870(+) A-I      intronic
chr22:29170433(+) A-I      intronic
chr22:29177757(+) A-I      intronic
chr22:29174371(+) A-I      intronic
chr22:29174449(+) A-I      intronic
chr22:29175429(+) A-I      intronic
chr22:29175433(+) A-I      intronic
chr22:29175437(+) A-I      intronic
chr22:29176565(+) A-I      intronic
chr22:29173963(+) A-I      intronic
chr22:29170294(+) A-I      intronic
chr22:29171683(+) A-I      intronic
chr22:29177771(+) A-I      intronic
chr22:29172538(+) A-I      intronic
chr22:29172834(+) A-I      intronic
chr22:29173042(+) A-I      intronic
chr22:29170307(+) A-I      intronic
chr22:29183207(+) A-I      3'UTR
chr22:29183269(+) A-I      3'UTR
chr22:29183267(+) A-I      3'UTR
chr22:29183308(+) A-I      3'UTR
chr22:29170997(+) A-I      intronic
chr22:29174434(+) A-I      intronic
chr22:29172469(+) A-I      intronic
chr22:29181450(+) A-I      intronic
chr22:29171128(+) A-I      intronic
chr22:29170573(+) A-I      intronic
chr22:29172672(+) A-I      intronic
chr22:29172702(+) A-I      intronic
chr22:29170461(+) A-I      intronic
chr22:29181814(+) A-I      intronic
chr22:29172700(+) A-I      intronic
chr22:29175474(+) A-I      intronic
chr22:29183208(+) A-I      3'UTR
chr22:29181411(+) A-I      intronic
chr22:29172946(+) A-I      intronic
chr22:29170460(+) A-I      intronic
chr22:29174445(+) A-I      intronic
chr22:29174341(+) A-I      intronic
chr22:29173900(+) A-I      intronic
chr22:29171658(+) A-I      intronic
chr22:29171625(+) A-I      intronic
chr22:29172739(+) A-I      intronic
chr22:29172150(+) A-I      intronic
chr22:29174475(+) A-I      intronic
chr22:29174485(+) A-I      intronic
chr22:29172712(+) A-I      intronic
chr22:29173220(+) A-I      intronic
chr22:29172480(+) A-I      intronic
chr22:29172141(+) A-I      intronic
chr22:29172833(+) A-I      intronic
chr22:29181316(+) A-I      intronic
chr22:29172564(+) A-I      intronic
chr22:29172846(+) A-I      intronic
chr22:29170195(+) A-I      intronic
chr22:29181836(+) A-I      intronic
chr22:29181790(+) A-I      intronic
chr22:29171632(+) A-I      intronic
chr22:29171129(+) A-I      intronic
chr22:29172212(+) A-I      intronic
chr22:29181437(+) A-I      intronic
chr22:29181397(+) A-I      intronic
chr22:29174508(+) A-I      intronic
chr22:29170499(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CCDC117
chr22:29181316(+) A-I intron -    15342557
chr22:29181397(+) A-I intron -    15342557
chr22:29181437(+) A-I intron -    15342557
chr22:29181438(+) A-I intron -    15342557
chr22:29181450(+) A-I intron -    15342557
chr22:29181868(+) A-I intron -    15342557
chr22:29183133(+) A-I exon 3'UTR    15342557

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CCDC117
chr22:29169736-29169737(+) m6A 3'UTR//5'UTR//CDS//intron       24981863
chr22:29179577-29179578(+) m6A 3'UTR//CDS       24284625//24209618//24981863//22608085
chr22:29182109-29182110(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr22:29182121-29182122(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr22:29182162-29182163(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr22:29182221-29182222(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr22:29182226-29182227(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr22:29182238-29182239(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr22:29182278-29182279(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr22:29182307-29182308(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr22:29182316-29182317(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr22:29182373-29182374(+) m6A 3'UTR       24284625//24981863//22608085
chr22:29182393-29182394(+) m6A 3'UTR       24284625//24981863//22608085
chr22:29182451-29182452(+) m6A 3'UTR       24284625//22608085
chr22:29183799-29183800(+) m6A 3'UTR       -
chr22:29184384-29184385(+) Y 3'UTR       26075521
chr22:29185027-29185028(+) m6A 3'UTR       27773535
chr22:29185091-29185092(+) m6A 3'UTR       27773535
chr22:29185142-29185143(+) m6A 3'UTR       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-29b-2-5p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Skeletal muscle myoblasts     21637849
CCDC117
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-29b-2-5p
Interactor2: CCDC117

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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