Detail Information

Basic Information:


  VIRBase ID:  

HHID00064477

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-29b-2-5p:           NOL4L:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-29b-2-5p NOL4L
miRBase
Accession/Entrez ID		 MIMAT0004515 140688
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - C20orf112//C20orf113

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-29b-2-5p
rs1389711693 chr1:207802500    C/A
rs200396959 chr1:207802497    C/T
rs971770488 chr1:207802503    T/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NOL4L
chr20:31057215(-) A-I      intronic
chr20:31057283(-) A-I      intronic
chr20:31056640(-) A-I      intronic
chr20:31050625(-) A-I      intronic
chr20:31057201(-) A-I      intronic
chr20:31125678(-) A-I      intronic
chr20:31131192(-) A-I      intronic
chr20:31050491(-) A-I      intronic
chr20:31125696(-) A-I      intronic
chr20:31130203(-) A-I      intronic
chr20:31057469(-) A-I      intronic
chr20:31057401(-) A-I      intronic
chr20:31057373(-) A-I      intronic
chr20:31057342(-) A-I      intronic
chr20:31057323(-) A-I      intronic
chr20:31057312(-) A-I      intronic
chr20:31057290(-) A-I      intronic
chr20:31057286(-) A-I      intronic
chr20:31057272(-) A-I      intronic
chr20:31057271(-) A-I      intronic
chr20:31056702(-) A-I      intronic
chr20:31056553(-) A-I      intronic
chr20:31056454(-) A-I      intronic
chr20:31053891(-) A-I      intronic
chr20:31053887(-) A-I      intronic
chr20:31050525(-) A-I      intronic
chr20:31050466(-) A-I      intronic
chr20:31050465(-) A-I      intronic
chr20:31049504(-) A-I      intronic
chr20:31130309(-) A-I      intronic
chr20:31130319(-) A-I      intronic
chr20:31130423(-) A-I      intronic
chr20:31131249(-) A-I      intronic
chr20:31133028(-) A-I      intronic
chr20:31056619(-) A-I      intronic
chr20:31056656(-) A-I      intronic
chr20:31056645(-) A-I      intronic
chr20:31056655(-) A-I      intronic
chr20:31131470(-) A-I      intronic
chr20:31057447(-) A-I      intronic
chr20:31057446(-) A-I      intronic
chr20:31134204(-) A-I      intronic
chr20:31130295(-) A-I      intronic
chr20:31132988(-) A-I      intronic
chr20:31057203(-) A-I      intronic
chr20:31057248(-) A-I      intronic
chr20:31054043(-) A-I      intronic
chr20:31050586(-) A-I      intronic
chr20:31132989(-) A-I      intronic
chr20:31133006(-) A-I      intronic
chr20:31050451(-) A-I      intronic
chr20:31134378(-) A-I      intronic
chr20:31056639(-) A-I      intronic
chr20:31134020(-) A-I      intronic
chr20:31133075(-) A-I      intronic
chr20:31134341(-) A-I      intronic
chr20:31134153(-) A-I      intronic
chr20:31125761(-) A-I      intronic
chr20:31133848(-) A-I      intronic
chr20:31049397(-) A-I      intronic
chr20:31134334(-) A-I      intronic
chr20:31125742(-) A-I      intronic
chr20:31053935(-) A-I      intronic
chr20:31132992(-) A-I      intronic
chr20:31053998(-) A-I      intronic
chr20:31133069(-) A-I      intronic
chr20:31050669(-) A-I      intronic
chr20:31057406(-) A-I      intronic
chr20:31131454(-) A-I      intronic
chr20:31132993(-) A-I      intronic
chr20:31134515(-) A-I      intronic
chr20:31133007(-) A-I      intronic
chr20:31134287(-) A-I      intronic
chr20:31130254(-) A-I      intronic
chr20:31049354(-) A-I      intronic
chr20:31130210(-) A-I      intronic
chr20:31134148(-) A-I      intronic
chr20:31130428(-) A-I      intronic
chr20:31050453(-) A-I      intronic
chr20:31134404(-) A-I      intronic
chr20:31057247(-) A-I      intronic
chr20:31056459(-) A-I      intronic
chr20:31056554(-) A-I      intronic
chr20:31130445(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NOL4L
chr20:31030866-31030867(-) m6A 3'UTR       27773535
chr20:31030873-31030874(-) m6A 3'UTR       27773535
chr20:31030880-31030881(-) m6A 3'UTR       27773535
chr20:31030898-31030899(-) m6A 3'UTR       27773535
chr20:31031009-31031010(-) m6A 3'UTR       27773535
chr20:31031618-31031619(-) m6A 3'UTR       24981863
chr20:31031640-31031641(-) m6A 3'UTR       24981863
chr20:31031827-31031828(-) m6A 3'UTR       27773535
chr20:31031833-31031834(-) m6A 3'UTR       27773535
chr20:31031892-31031893(-) m6A 3'UTR       27773535
chr20:31032321-31032322(-) m6A 3'UTR       24981863
chr20:31032342-31032343(-) m6A 3'UTR       24981863
chr20:31032359-31032360(-) m6A 3'UTR       24981863
chr20:31033472-31033473(-) m6A 3'UTR       24284625//27773535
chr20:31033481-31033482(-) m6A 3'UTR       24284625//27773535
chr20:31033634-31033635(-) m6A 3'UTR       27773535
chr20:31033969-31033970(-) m6A 3'UTR       27773535
chr20:31033979-31033980(-) m6A 3'UTR       27773535
chr20:31033986-31033987(-) m6A 3'UTR       27773535
chr20:31034326-31034327(-) m6A 3'UTR       24981863
chr20:31034397-31034398(-) m6A 3'UTR       24981863
chr20:31034471-31034472(-) m6A 3'UTR       27773535
chr20:31034492-31034493(-) m6A 3'UTR       27773535
chr20:31034551-31034552(-) m6A 3'UTR       27773535
chr20:31034664-31034665(-) m6A 3'UTR       27773535
chr20:31034692-31034693(-) m6A 3'UTR       27773535
chr20:31034732-31034733(-) m6A 3'UTR       -
chr20:31034994-31034995(-) m6A 3'UTR       24981863//27773535
chr20:31035082-31035083(-) m6A 3'UTR       24284625//24981863//27773535
chr20:31035235-31035236(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr20:31035250-31035251(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr20:31035343-31035344(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr20:31035402-31035403(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr20:31035420-31035421(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr20:31035428-31035429(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr20:31035609-31035610(-) m6A CDS       24284625//24209618//24981863//27773535//27371828
chr20:31040049-31040050(-) m6A CDS       24284625//24209618//24981863//27773535//27371828
chr20:31040056-31040057(-) m6A CDS       24284625//24209618//24981863//27773535//27371828
chr20:31040145-31040146(-) m6A CDS       24284625//24209618//24981863//27773535//27371828
chr20:31040202-31040203(-) m6A CDS       24284625//24209618//27773535//27371828
chr20:31040220-31040221(-) m6A CDS       24284625//24209618//27773535//27371828
chr20:31040736-31040737(-) m6A CDS//exon       24284625//27773535
chr20:31040765-31040766(-) m6A CDS//exon       24284625//27773535
chr20:31040803-31040804(-) m6A CDS//exon       24284625//27773535
chr20:31041403-31041404(-) m6A CDS//exon       27773535
chr20:31041436-31041437(-) m6A CDS//exon       27773535
chr20:31041499-31041500(-) m6A CDS//exon       -
chr20:31041524-31041525(-) m6A CDS//exon       -
chr20:31044071-31044072(-) m6A CDS//exon       24284625
chr20:31044149-31044150(-) m6A CDS//exon       24284625
chr20:31052730-31052731(-) m6A 3'UTR//intron       -
chr20:31052844-31052845(-) m6A 3'UTR//CDS//intron       25456834
chr20:31052865-31052866(-) m6A 3'UTR//CDS//intron       25456834
chr20:31052883-31052884(-) m6A 3'UTR//CDS//intron       25456834
chr20:31062538-31062539(-) m6A 5'UTR//CDS//exon       -
chr20:31097708-31097709(-) m6A CDS//intron       -
chr20:31108715-31108716(-) m6A CDS       27371828
chr20:31115571-31115572(-) m6A CDS//exon       27371828
chr20:31120128-31120129(-) m6A 5'UTR//intron       -
chr20:31136460-31136461(-) m6A exon//intron       27773535
chr20:31136467-31136468(-) m6A exon//intron       27773535
chr20:31136481-31136482(-) m6A exon//intron       -
chr20:31136580-31136581(-) m6A exon//intron       -
chr20:31136590-31136591(-) m6A exon//intron       -
chr20:31172416-31172417(-) m6A 5'UTR//CDS//exon       27371828
chr20:31172508-31172509(-) m6A 5'UTR//CDS//exon       27371828
chr20:31172571-31172572(-) m6A 5'UTR//CDS//exon       24209618//27371828
chr20:31172606-31172607(-) m6A 5'UTR//CDS//exon       24209618//27371828
chr20:31172633-31172634(-) m6A CDS//exon       24209618//27371828
chr20:31172803-31172804(-) m6A 5'UTR//exon       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-29b-2-5p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Skeletal muscle myoblasts     21637849
NOL4L
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-29b-2-5p
Interactor2: NOL4L

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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