Detail Information

Basic Information:


  VIRBase ID:  

HHID00064469

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-29b-2-5p:           BMF:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-29b-2-5p BMF
miRBase
Accession/Entrez ID		 MIMAT0004515 90427
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-29b-2-5p
rs1389711693 chr1:207802500    C/A
rs200396959 chr1:207802497    C/T
rs971770488 chr1:207802503    T/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR BMF
chr15:40386816(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase BMF
chr15:40380206-40380207(-) m6A 3'UTR       27773535
chr15:40380314-40380315(-) m6A 3'UTR       27773535
chr15:40380499-40380500(-) m6A 3'UTR       25456834
chr15:40380557-40380558(-) m6A 3'UTR       24284625//25456834//27773535//27371828
chr15:40380585-40380586(-) m6A 3'UTR       24284625//25456834//27773535//27371828//22608085
chr15:40380609-40380610(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr15:40380667-40380668(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536
chr15:40380717-40380718(-) m6A 3'UTR       25456834//27773535//27773536
chr15:40380761-40380762(-) m6A 3'UTR       27773535//27773536
chr15:40381063-40381064(-) m6A 3'UTR       25456834
chr15:40381085-40381086(-) m6A 3'UTR       25456834
chr15:40381395-40381396(-) m6A 3'UTR       27773535
chr15:40381429-40381430(-) m6A 3'UTR       27773535
chr15:40381455-40381456(-) m6A 3'UTR       27773535
chr15:40381493-40381494(-) m6A 3'UTR       27773535
chr15:40381578-40381579(-) m6A 3'UTR       24284625//28052920//27773535
chr15:40381657-40381658(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr15:40381733-40381734(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr15:40381743-40381744(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr15:40381754-40381755(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr15:40381793-40381794(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr15:40381867-40381868(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22608085
chr15:40381910-40381911(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//22608085
chr15:40381991-40381992(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22608085
chr15:40382058-40382059(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//22608085
chr15:40382070-40382071(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//22575960//22608085
chr15:40382082-40382083(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//22575960//22608085
chr15:40382224-40382225(-) m6A 3'UTR       24284625//27773535//22608085
chr15:40382435-40382436(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr15:40382491-40382492(-) m6A 3'UTR       24284625//24981863//28052920//27773535//22608085
chr15:40382505-40382506(-) m6A 3'UTR       24284625//24981863//28052920//27773535//22608085
chr15:40382546-40382547(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr15:40382555-40382556(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr15:40382609-40382610(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr15:40382642-40382643(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr15:40382776-40382777(-) m6A 3'UTR       24284625//27773535//22608085
chr15:40382847-40382848(-) m6A 3'UTR       24284625//24981863//28052920//27773535//22608085
chr15:40382905-40382906(-) m6A 3'UTR       24284625//24981863//28052920//27773535//22608085
chr15:40382972-40382973(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22608085
chr15:40382992-40382993(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22608085
chr15:40382999-40383000(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22608085
chr15:40383071-40383072(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr15:40383104-40383105(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr15:40383117-40383118(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr15:40383208-40383209(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr15:40383283-40383284(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr15:40383303-40383304(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr15:40383308-40383309(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr15:40383324-40383325(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr15:40383333-40383334(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr15:40383362-40383363(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr15:40383574-40383575(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22608085
chr15:40383591-40383592(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22608085
chr15:40383620-40383621(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr15:40383640-40383641(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr15:40383771-40383772(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr15:40383820-40383821(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr15:40383919-40383920(-) m6A 3'UTR       24284625//25456834//24981863//27773535
chr15:40383931-40383932(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828
chr15:40383940-40383941(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828
chr15:40383952-40383953(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828
chr15:40384012-40384013(-) m6A CDS       24284625//25456834//24981863//27773535
chr15:40384078-40384079(-) m6A CDS       24284625//27773535
chr15:40396408-40396409(-) m6A CDS//intron       24284625
chr15:40398014-40398015(-) m6A CDS       24284625//27773535
chr15:40398073-40398074(-) m6A CDS       27773535//27371828//27773536
chr15:40398087-40398088(-) m6A CDS       27773535//27371828//27773536
chr15:40398165-40398166(-) m6A CDS       24284625//27773535//27371828//27773536
chr15:40400803-40400804(-) m6A 5'UTR//intron       25456834
chr15:40400837-40400838(-) m6A 5'UTR//intron       25456834//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-29b-2-5p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Skeletal muscle myoblasts     21637849
BMF
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-29b-2-5p
Interactor2: BMF

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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