Detail Information

Basic Information:


  VIRBase ID:  

HHID00064439

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-29b-2-5p:           NDC1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-29b-2-5p NDC1
miRBase
Accession/Entrez ID		 MIMAT0004515 55706
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - NET3//TMEM48

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-29b-2-5p
rs1389711693 chr1:207802500    C/A
rs200396959 chr1:207802497    C/T
rs971770488 chr1:207802503    T/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NDC1
chr1:54260325(-) A-I      intronic
chr1:54260326(-) A-I      intronic
chr1:54260439(-) A-I      intronic
chr1:54260351(-) A-I      intronic
chr1:54250364(-) A-I      intronic
chr1:54250342(-) A-I      intronic
chr1:54250284(-) A-I      intronic
chr1:54286582(-) A-I      intronic
chr1:54244707(-) A-I      intronic
chr1:54244643(-) A-I      intronic
chr1:54244597(-) A-I      intronic
chr1:54244563(-) A-I      intronic
chr1:54244558(-) A-I      intronic
chr1:54241097(-) A-I      intronic
chr1:54240995(-) A-I      intronic
chr1:54240990(-) A-I      intronic
chr1:54240344(-) A-I      intronic
chr1:54234788(-) A-I      intronic
chr1:54234741(-) A-I      intronic
chr1:54234729(-) A-I      intronic
chr1:54300560(-) A-I      intronic
chr1:54297294(-) A-I      intronic
chr1:54300555(-) A-I      intronic
chr1:54253823(-) A-I      intronic
chr1:54296440(-) A-I      intronic
chr1:54253812(-) A-I      intronic
chr1:54252644(-) A-I      intronic
chr1:54251406(-) A-I      intronic
chr1:54250531(-) A-I      intronic
chr1:54298926(-) A-I      intronic
chr1:54298893(-) A-I      intronic
chr1:54298603(-) A-I      intronic
chr1:54254513(-) A-I      intronic
chr1:54296841(-) A-I      intronic
chr1:54254486(-) A-I      intronic
chr1:54254442(-) A-I      intronic
chr1:54254051(-) A-I      intronic
chr1:54253928(-) A-I      intronic
chr1:54296329(-) A-I      intronic
chr1:54296290(-) A-I      intronic
chr1:54296274(-) A-I      intronic
chr1:54296070(-) A-I      intronic
chr1:54295884(-) A-I      intronic
chr1:54295700(-) A-I      intronic
chr1:54295581(-) A-I      intronic
chr1:54295569(-) A-I      intronic
chr1:54291102(-) A-I      intronic
chr1:54290983(-) A-I      intronic
chr1:54290957(-) A-I      intronic
chr1:54286575(-) A-I      intronic
chr1:54286480(-) A-I      intronic
chr1:54244708(-) A-I      intronic
chr1:54302003(-) A-I      intronic
chr1:54271647(-) A-I      intronic
chr1:54271635(-) A-I      intronic
chr1:54271098(-) A-I      intronic
chr1:54271062(-) A-I      intronic
chr1:54270354(-) A-I      intronic
chr1:54300564(-) A-I      intronic
chr1:54296331(-) A-I      intronic
chr1:54296371(-) A-I      intronic
chr1:54296435(-) A-I      intronic
chr1:54270353(-) A-I      intronic
chr1:54270343(-) A-I      intronic
chr1:54268977(-) A-I      intronic
chr1:54268295(-) A-I      intronic
chr1:54268240(-) A-I      intronic
chr1:54260499(-) A-I      intronic
chr1:54260466(-) A-I      intronic
chr1:54260339(-) A-I      intronic
chr1:54259826(-) A-I      intronic
chr1:54259787(-) A-I      intronic
chr1:54259764(-) A-I      intronic
chr1:54259741(-) A-I      intronic
chr1:54259721(-) A-I      intronic
chr1:54259536(-) A-I      intronic
chr1:54295582(-) A-I      intronic
chr1:54295702(-) A-I      intronic
chr1:54296730(-) A-I      intronic
chr1:54260465(-) A-I      intronic
chr1:54244774(-) A-I      intronic
chr1:54263954(-) A-I      intronic
chr1:54253855(-) A-I      intronic
chr1:54299688(-) A-I      intronic
chr1:54241897(-) A-I      intronic
chr1:54259307(-) A-I      intronic
chr1:54241068(-) A-I      intronic
chr1:54257632(-) A-I      intronic
chr1:54254024(-) A-I      intronic
chr1:54300673(-) A-I      intronic
chr1:54259777(-) A-I      intronic
chr1:54260375(-) A-I      intronic
chr1:54268316(-) A-I      intronic
chr1:54296015(-) A-I      intronic
chr1:54267594(-) A-I      intronic
chr1:54244704(-) A-I      intronic
chr1:54254197(-) A-I      intronic
chr1:54259330(-) A-I      intronic
chr1:54253910(-) A-I      intronic
chr1:54301977(-) A-I      intronic
chr1:54253881(-) A-I      intronic
chr1:54254564(-) A-I      intronic
chr1:54260436(-) A-I      intronic
chr1:54268300(-) A-I      intronic
chr1:54252577(-) A-I      intronic
chr1:54286572(-) A-I      intronic
chr1:54252516(-) A-I      intronic
chr1:54299601(-) A-I      intronic
chr1:54272798(-) A-I      intronic
chr1:54270212(-) A-I      intronic
chr1:54296822(-) A-I      intronic
chr1:54295658(-) A-I      intronic
chr1:54254450(-) A-I      intronic
chr1:54302236(-) A-I      intronic
chr1:54296786(-) A-I      intronic
chr1:54251386(-) A-I      intronic
chr1:54244254(-) A-I      intronic
chr1:54296835(-) A-I      intronic
chr1:54268963(-) A-I      intronic
chr1:54264044(-) A-I      intronic
chr1:54303097(-) A-I      intronic
chr1:54245884(-) A-I      intronic
chr1:54298970(-) A-I      intronic
chr1:54259872(-) A-I      intronic
chr1:54260322(-) A-I      intronic
chr1:54254568(-) A-I      intronic
chr1:54259338(-) A-I      intronic
chr1:54234713(-) A-I      intronic
chr1:54254238(-) A-I      intronic
chr1:54286574(-) A-I      intronic
chr1:54241067(-) A-I      intronic
chr1:54240396(-) A-I      intronic
chr1:54241765(-) A-I      intronic
chr1:54268345(-) A-I      intronic
chr1:54300753(-) A-I      intronic
chr1:54252508(-) A-I      intronic
chr1:54268268(-) A-I      intronic
chr1:54299683(-) A-I      intronic
chr1:54298609(-) A-I      intronic
chr1:54259393(-) A-I      intronic
chr1:54300563(-) A-I      intronic
chr1:54259496(-) A-I      intronic
chr1:54298945(-) A-I      intronic
chr1:54302333(-) A-I      intronic
chr1:54246728(-) A-I      intronic
chr1:54286524(-) A-I      intronic
chr1:54253885(-) A-I      intronic
chr1:54303118(-) A-I      intronic
chr1:54264038(-) A-I      intronic
chr1:54268812(-) A-I      intronic
chr1:54238300(-) A-I      intronic
chr1:54296705(-) A-I      intronic
chr1:54259881(-) A-I      intronic
chr1:54254526(-) A-I      intronic
chr1:54259482(-) A-I      intronic
chr1:54245762(-) A-I      intronic
chr1:54240305(-) A-I      intronic
chr1:54267541(-) A-I      intronic
chr1:54296650(-) A-I      intronic
chr1:54240341(-) A-I      intronic
chr1:54256233(-) A-I      intronic
chr1:54254240(-) A-I      intronic
chr1:54259760(-) A-I      intronic
chr1:54296005(-) A-I      intronic
chr1:54260448(-) A-I      intronic
chr1:54254066(-) A-I      intronic
chr1:54268083(-) A-I      intronic
chr1:54260338(-) A-I      intronic
chr1:54268089(-) A-I      intronic
chr1:54295723(-) A-I      intronic
chr1:54299602(-) A-I      intronic
chr1:54253940(-) A-I      intronic
chr1:54268119(-) A-I      intronic
chr1:54270968(-) A-I      intronic
chr1:54268811(-) A-I      intronic
chr1:54298956(-) A-I      intronic
chr1:54240438(-) A-I      intronic
chr1:54259397(-) A-I      intronic
chr1:54250276(-) A-I      intronic
chr1:54253226(-) A-I      intronic
chr1:54241724(-) A-I      intronic
chr1:54298590(-) A-I      intronic
chr1:54259337(-) A-I      intronic
chr1:54260286(-) A-I      intronic
chr1:54296776(-) A-I      intronic
chr1:54240528(-) A-I      intronic
chr1:54301976(-) A-I      intronic
chr1:54286463(-) A-I      intronic
chr1:54246625(-) A-I      intronic
chr1:54253923(-) A-I      intronic
chr1:54268943(-) A-I      intronic
chr1:54300693(-) A-I      intronic
chr1:54250164(-) A-I      intronic
chr1:54243644(-) A-I      intronic
chr1:54298890(-) A-I      intronic
chr1:54297315(-) A-I      intronic
chr1:54259357(-) A-I      intronic
chr1:54244598(-) A-I      intronic
chr1:54243527(-) A-I      intronic
chr1:54296289(-) A-I      intronic
chr1:54295639(-) A-I      intronic
chr1:54242898(-) A-I      intronic
chr1:54243443(-) A-I      intronic
chr1:54268332(-) A-I      intronic
chr1:54238326(-) A-I      intronic
chr1:54259843(-) A-I      intronic
chr1:54300559(-) A-I      intronic
chr1:54299036(-) A-I      intronic
chr1:54300674(-) A-I      intronic
chr1:54260426(-) A-I      intronic
chr1:54244649(-) A-I      intronic
chr1:54268289(-) A-I      intronic
chr1:54296638(-) A-I      intronic
chr1:54254012(-) A-I      intronic
chr1:54252494(-) A-I      intronic
chr1:54241916(-) A-I      intronic
chr1:54295741(-) A-I      intronic
chr1:54298955(-) A-I      intronic
chr1:54260340(-) A-I      intronic
chr1:54300752(-) A-I      intronic
chr1:54267600(-) A-I      intronic
chr1:54271078(-) A-I      intronic
chr1:54267599(-) A-I      intronic
chr1:54259403(-) A-I      intronic
chr1:54295724(-) A-I      intronic
chr1:54302409(-) A-I      intronic
chr1:54238276(-) A-I      intronic
chr1:54241766(-) A-I      intronic
chr1:54244204(-) A-I      intronic
chr1:54259324(-) A-I      intronic
chr1:54286508(-) A-I      intronic
chr1:54259327(-) A-I      intronic
chr1:54260413(-) A-I      intronic
chr1:54241026(-) A-I      intronic
chr1:54259389(-) A-I      intronic
chr1:54240501(-) A-I      intronic
chr1:54270278(-) A-I      intronic
chr1:54260308(-) A-I      intronic
chr1:54241205(-) A-I      intronic
chr1:54243651(-) A-I      intronic
chr1:54259537(-) A-I      intronic
chr1:54295661(-) A-I      intronic
chr1:54295667(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NDC1
chr1:54231885-54231886(-) m6A 3'UTR       24981863//22608085
chr1:54231939-54231940(-) m6A 3'UTR       24981863//22608085
chr1:54231970-54231971(-) m6A 3'UTR       24284625//24981863//22608085
chr1:54231976-54231977(-) m6A 3'UTR       24284625//24981863//22608085
chr1:54232058-54232059(-) m6A 3'UTR       24284625//24981863//22608085
chr1:54232087-54232088(-) m6A 3'UTR       24284625
chr1:54233328-54233329(-) m6A 3'UTR       -
chr1:54233455-54233456(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr1:54233510-54233511(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr1:54233551-54233552(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:54233590-54233591(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:54233628-54233629(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:54233672-54233673(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr1:54233684-54233685(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr1:54238009-54238010(-) m6A CDS       24284625//24981863//22575960//22608085
chr1:54238044-54238045(-) m6A CDS       24284625//24981863//22575960//22608085
chr1:54238077-54238078(-) m6A CDS       24284625//22575960//22608085
chr1:54238091-54238092(-) m6A CDS       24284625//22575960
chr1:54238120-54238121(-) m6A CDS       24284625//22575960
chr1:54304031-54304032(-) m6A 5'UTR//exon       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-29b-2-5p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Skeletal muscle myoblasts     21637849
NDC1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-29b-2-5p
Interactor2: NDC1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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