Detail Information

Basic Information:


  VIRBase ID:  

HHID00064430

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-29b-2-5p:           C21orf91:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-29b-2-5p C21orf91
miRBase
Accession/Entrez ID		 MIMAT0004515 54149
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - C21orf14//C21orf38//CSSG1//EURL//YG81

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-29b-2-5p
rs1389711693 chr1:207802500    C/A
rs200396959 chr1:207802497    C/T
rs971770488 chr1:207802503    T/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR C21orf91
chr21:19178991(-) A-I      intronic
chr21:19178911(-) A-I      intronic
chr21:19178899(-) A-I      intronic
chr21:19167141(-) A-I      intronic
chr21:19167201(-) A-I      intronic
chr21:19173867(-) A-I      intronic
chr21:19173846(-) A-I      intronic
chr21:19167220(-) A-I      intronic
chr21:19167218(-) A-I      intronic
chr21:19188070(-) A-I      intronic
chr21:19178994(-) A-I      intronic
chr21:19167192(-) A-I      intronic
chr21:19167139(-) A-I      intronic
chr21:19188159(-) A-I      intronic
chr21:19188116(-) A-I      intronic
chr21:19188243(-) A-I      intronic
chr21:19188180(-) A-I      intronic
chr21:19188250(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase C21orf91
chr21:19165615-19165616(-) m6A 3'UTR       22608085
chr21:19165675-19165676(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr21:19165683-19165684(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr21:19165725-19165726(-) m6A 3'UTR       24284625//24981863//26404942//27773535//22608085
chr21:19165738-19165739(-) m6A 3'UTR//CDS       24284625//24981863//26404942//27773535//22608085
chr21:19165766-19165767(-) m6A 3'UTR//CDS       24284625//24981863//26404942//27773535//22608085
chr21:19165801-19165802(-) m6A 3'UTR//CDS       24284625//24981863//26404942//27773535//22608085
chr21:19165815-19165816(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr21:19168928-19168929(-) m6A CDS       24284625//24209618//27773535//22608085
chr21:19168958-19168959(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22608085
chr21:19169049-19169050(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22608085
chr21:19169056-19169057(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22608085
chr21:19169218-19169219(-) m6A CDS//exon       24284625//26404942//27773535//22608085
chr21:19169278-19169279(-) m6A CDS//exon       24209618//24981863//26404942//27773535//22608085
chr21:19169300-19169301(-) m6A CDS//exon       24209618//24981863//26404942//27773535//22608085
chr21:19169353-19169354(-) m6A CDS//exon       24209618//24981863//26404942//27773535//22608085
chr21:19169383-19169384(-) m6A CDS//exon       24209618//24981863//27773535//22608085
chr21:19183720-19183721(-) m6A exon//intron       27773535//22608085
chr21:19183780-19183781(-) m6A exon//intron       27773535
chr21:19190501-19190502(-) m6A exon//intron       22608085
chr21:19190550-19190551(-) m6A CDS//exon       24981863//27371828//22608085
chr21:19190562-19190563(-) m6A CDS//exon       25456834//24981863//27371828//22608085
chr21:19190569-19190570(-) m6A CDS//exon       25456834//24981863//27371828//22608085
chr21:19190609-19190610(-) m6A CDS//exon       25456834//24981863//27371828//22608085
chr21:19191196-19191197(-) m6A 5'UTR//intron       25456834//24981863//27371828//22608085
chr21:19191663-19191664(-) m6A 5'UTR//exon       25456834
chr21:19191677-19191678(-) m6A 5'UTR//exon       25456834

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-29b-2-5p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Skeletal muscle myoblasts     21637849
C21orf91
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-29b-2-5p
Interactor2: C21orf91

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...