Detail Information

Basic Information:


  VIRBase ID:  

HHID00064307

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-29b-1-5p:           LYSMD1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-29b-1-5p LYSMD1
miRBase
Accession/Entrez ID		 MIMAT0004514 388695
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - SB145

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-29b-1-5p
rs1189550020 chr7:130877522    G/GA
rs1554489373 chr7:130877519    T/C
rs1554489375 chr7:130877520    A/C
rs782109811 chr7:130877509    TA/T
rs778204762 chr7:130877526    C/A
rs778204762 chr7:130877526    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LYSMD1
chr1:151136485(-) A-I      intronic
chr1:151134902(-) A-I      intronic
chr1:151136459(-) A-I      intronic
chr1:151136081(-) A-I      intronic
chr1:151134899(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LYSMD1
chr1:151132670-151132671(-) Y 3'UTR       26075521
chr1:151133160-151133161(-) m6A 3'UTR       25456834//27371828//22608085
chr1:151133165-151133166(-) m6A 3'UTR       25456834//27371828//22608085
chr1:151133276-151133277(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr1:151133313-151133314(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr1:151133346-151133347(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:151133363-151133364(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:151133385-151133386(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:151133395-151133396(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:151133401-151133402(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:151134323-151134324(-) m6A CDS       27773535//27371828
chr1:151134374-151134375(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr1:151134381-151134382(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr1:151134463-151134464(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr1:151134481-151134482(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr1:151134515-151134516(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr1:151134553-151134554(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr1:151134570-151134571(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr1:151137578-151137579(-) m6A CDS//intron       24284625//24981863//27773535//27371828//22608085
chr1:151137591-151137592(-) m6A CDS//intron       24284625//24981863//27773535//27371828//22608085
chr1:151137692-151137693(-) m6A CDS//intron       24284625//24981863//27371828//22608085
chr1:151137716-151137717(-) m6A CDS//intron       24284625//24981863//27371828//22608085
chr1:151137807-151137808(-) m6A 5'UTR//intron       24981863//27773535//22608085
chr1:151137858-151137859(-) m6A 5'UTR//intron       24981863//27773535//27371828//22608085
chr1:151137898-151137899(-) m6A 5'UTR//intron       24981863//27773535//27371828//22608085
chr1:151137934-151137935(-) m6A 5'UTR//intron       24284625//25456834//24981863//27773535//27371828//22608085
chr1:151137950-151137951(-) m6A 5'UTR//intron       24284625//25456834//24981863//27773535//27371828//22608085
chr1:151138066-151138067(-) m6A 5'UTR//intron       24284625//25456834//24981863//27773535//27371828//22608085
chr1:151138120-151138121(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:151138132-151138133(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:151138246-151138247(-) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:151138304-151138305(-) m6A 5'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr1:151138365-151138366(-) m6A 5'UTR       24284625//25456834//24981863//27773535//27371828//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-29b-1-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Skeletal muscle myoblasts     21637849
LYSMD1
Exosome Blood     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-29b-1-5p
Interactor2: LYSMD1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...