Basic Information:

  VIRBase ID:  

HHID00064306

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-29b-1-5p:  MIMAT0004514          SMCO2:  NM_001145010     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-29b-1-5p	SMCO2
miRBase Accession/Entrez ID	MIMAT0004514	341346
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	C12orf70

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-29b-1-5p	rs1189550020 chr7:130877522    G/GA rs1554489373 chr7:130877519    T/C rs1554489375 chr7:130877520    A/C rs782109811 chr7:130877509    TA/T rs778204762 chr7:130877526    C/A rs778204762 chr7:130877526    C/T

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SMCO2	chr12:27636420(+) A-I      intronic chr12:27646423(+) A-I      intronic chr12:27638632(+) A-I      intronic chr12:27637062(+) A-I      intronic chr12:27644701(+) A-I      intronic chr12:27637652(+) A-I      intronic chr12:27637665(+) A-I      intronic chr12:27638463(+) A-I      intronic chr12:27638618(+) A-I      intronic chr12:27646342(+) A-I      intronic chr12:27643758(+) A-I      intronic chr12:27636548(+) A-I      intronic chr12:27646308(+) A-I      intronic chr12:27637140(+) A-I      intronic chr12:27643793(+) A-I      intronic chr12:27644747(+) A-I      intronic chr12:27635826(+) A-I      intronic chr12:27638462(+) A-I      intronic chr12:27643774(+) A-I      intronic chr12:27637218(+) A-I      intronic chr12:27646385(+) A-I      intronic chr12:27643634(+) A-I      intronic chr12:27642043(+) A-I      intronic chr12:27636596(+) A-I      intronic chr12:27644840(+) A-I      intronic chr12:27646407(+) A-I      intronic chr12:27646306(+) A-I      intronic chr12:27646344(+) A-I      intronic chr12:27644763(+) A-I      intronic chr12:27644754(+) A-I      intronic chr12:27644826(+) A-I      intronic chr12:27637104(+) A-I      intronic chr12:27644852(+) A-I      intronic chr12:27637138(+) A-I      intronic chr12:27636580(+) A-I      intronic chr12:27642061(+) A-I      intronic chr12:27646380(+) A-I      intronic chr12:27635772(+) A-I      intronic chr12:27646318(+) A-I      intronic chr12:27637114(+) A-I      intronic chr12:27643754(+) A-I      intronic chr12:27643796(+) A-I      intronic chr12:27643643(+) A-I      intronic chr12:27643629(+) A-I      intronic chr12:27643681(+) A-I      intronic chr12:27637607(+) A-I      intronic chr12:27644802(+) A-I      intronic chr12:27638563(+) A-I      intronic chr12:27637736(+) A-I      intronic chr12:27644776(+) A-I      intronic chr12:27638457(+) A-I      intronic chr12:27643601(+) A-I      intronic chr12:27644904(+) A-I      intronic chr12:27643630(+) A-I      intronic chr12:27643744(+) A-I      intronic

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-29b-1-5p	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Seminal plasma     23539611 Microvesicle Fibroblasts|Mesenchymal stem cells     - Mitochondrion Skeletal muscle myoblasts     21637849
	SMCO2	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-29b-1-5p
Interactor2: SMCO2

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	CDS
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.