Detail Information

Basic Information:


  VIRBase ID:  

HHID00064286

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-29b-1-5p:           CCSAP:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-29b-1-5p CCSAP
miRBase
Accession/Entrez ID		 MIMAT0004514 126731
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - C1orf96//CSAP

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-29b-1-5p
rs1189550020 chr7:130877522    G/GA
rs1554489373 chr7:130877519    T/C
rs1554489375 chr7:130877520    A/C
rs782109811 chr7:130877509    TA/T
rs778204762 chr7:130877526    C/A
rs778204762 chr7:130877526    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CCSAP
chr1:229463559(-) A-I      intronic
chr1:229463553(-) A-I      intronic
chr1:229463540(-) A-I      intronic
chr1:229470021(-) A-I      intronic
chr1:229470019(-) A-I      intronic
chr1:229467769(-) A-I      intronic
chr1:229467765(-) A-I      intronic
chr1:229463533(-) A-I      intronic
chr1:229464145(-) A-I      intronic
chr1:229463507(-) A-I      intronic
chr1:229464186(-) A-I      intronic
chr1:229470944(-) A-I      intronic
chr1:229467783(-) A-I      intronic
chr1:229463372(-) A-I      intronic
chr1:229469955(-) A-I      intronic
chr1:229464335(-) A-I      intronic
chr1:229469896(-) A-I      intronic
chr1:229463351(-) A-I      intronic
chr1:229464281(-) A-I      intronic
chr1:229469506(-) A-I      intronic
chr1:229464300(-) A-I      intronic
chr1:229469500(-) A-I      intronic
chr1:229464108(-) A-I      intronic
chr1:229466529(-) A-I      intronic
chr1:229470894(-) A-I      intronic
chr1:229471004(-) A-I      intronic
chr1:229469493(-) A-I      intronic
chr1:229469496(-) A-I      intronic
chr1:229463494(-) A-I      intronic
chr1:229470858(-) A-I      intronic
chr1:229467705(-) A-I      intronic
chr1:229469982(-) A-I      intronic
chr1:229467767(-) A-I      intronic
chr1:229464327(-) A-I      intronic
chr1:229464150(-) A-I      intronic
chr1:229469890(-) A-I      intronic
chr1:229464140(-) A-I      intronic
chr1:229464123(-) A-I      intronic
chr1:229470966(-) A-I      intronic
chr1:229469956(-) A-I      intronic
chr1:229469422(-) A-I      intronic
chr1:229464172(-) A-I      intronic
chr1:229469464(-) A-I      intronic
chr1:229467772(-) A-I      intronic
chr1:229469533(-) A-I      intronic
chr1:229470014(-) A-I      intronic
chr1:229466400(-) A-I      intronic
chr1:229464156(-) A-I      intronic
chr1:229471035(-) A-I      intronic
chr1:229470011(-) A-I      intronic
chr1:229469566(-) A-I      intronic
chr1:229467793(-) A-I      intronic
chr1:229469894(-) A-I      intronic
chr1:229467727(-) A-I      intronic
chr1:229464326(-) A-I      intronic
chr1:229469454(-) A-I      intronic
chr1:229464343(-) A-I      intronic
chr1:229464121(-) A-I      intronic
chr1:229469370(-) A-I      intronic
chr1:229471014(-) A-I      intronic
chr1:229467728(-) A-I      intronic
chr1:229469565(-) A-I      intronic
chr1:229463360(-) A-I      intronic
chr1:229463447(-) A-I      intronic
chr1:229464253(-) A-I      intronic
chr1:229467669(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CCSAP
chr1:229459039-229459040(-) m6A 3'UTR       27773535
chr1:229459059-229459060(-) m6A 3'UTR       27773535
chr1:229459067-229459068(-) m6A 3'UTR       27773535
chr1:229459074-229459075(-) m6A 3'UTR       27773535
chr1:229459090-229459091(-) m6A 3'UTR       27773535
chr1:229459102-229459103(-) m6A 3'UTR       27773535
chr1:229460774-229460775(-) m6A 3'UTR//exon       24209618//24981863//27773535//27371828//22575960//22608085
chr1:229460790-229460791(-) m6A 3'UTR//exon       24209618//24981863//27773535//27371828//22575960//22608085
chr1:229460882-229460883(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:229460897-229460898(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:229460914-229460915(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:229460920-229460921(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:229460925-229460926(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:229460964-229460965(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:229460976-229460977(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:229461027-229461028(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:229461057-229461058(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:229461104-229461105(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr1:229461122-229461123(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr1:229461129-229461130(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr1:229462519-229462520(-) m6A CDS//exon       24284625//24981863//27773535//27371828//22608085
chr1:229462544-229462545(-) m6A CDS//exon       24284625//24981863//27773535//27371828//22608085
chr1:229462581-229462582(-) m6A CDS//exon       24284625//24981863//28052920//27773535//27371828//22608085
chr1:229462632-229462633(-) m6A CDS//exon       24284625//24981863//28052920//27773535//27371828//22608085
chr1:229462696-229462697(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr1:229462705-229462706(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr1:229462711-229462712(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr1:229462718-229462719(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr1:229462724-229462725(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr1:229476338-229476339(-) m6A 5'UTR//intron       24209618
chr1:229478033-229478034(-) m6A CDS//exon       24209618//27371828//27773536
chr1:229478931-229478932(-) m6A exon       27371828
chr1:229478952-229478953(-) m6A exon       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-29b-1-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Skeletal muscle myoblasts     21637849
CCSAP
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-29b-1-5p
Interactor2: CCSAP

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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