Detail Information

Basic Information:


  VIRBase ID:  

HHID00064282

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-29b-1-5p:           N4BP2L1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-29b-1-5p N4BP2L1
miRBase
Accession/Entrez ID		 MIMAT0004514 90634
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CG018

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-29b-1-5p
rs1189550020 chr7:130877522    G/GA
rs1554489373 chr7:130877519    T/C
rs1554489375 chr7:130877520    A/C
rs782109811 chr7:130877509    TA/T
rs778204762 chr7:130877526    C/A
rs778204762 chr7:130877526    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR N4BP2L1
chr13:32980151(-) A-I      intronic
chr13:32988256(-) A-I      intronic
chr13:32988213(-) A-I      intronic
chr13:32988212(-) A-I      intronic
chr13:32988196(-) A-I      intronic
chr13:32979512(-) A-I      intronic
chr13:32979509(-) A-I      intronic
chr13:32987286(-) A-I      intronic
chr13:32987238(-) A-I      intronic
chr13:32979388(-) A-I      intronic
chr13:32987198(-) A-I      intronic
chr13:32987199(-) A-I      intronic
chr13:32986764(-) A-I      intronic
chr13:32988237(-) A-I      intronic
chr13:32979535(-) A-I      intronic
chr13:32987266(-) A-I      intronic
chr13:32986547(-) A-I      intronic
chr13:32986546(-) A-I      intronic
chr13:32980313(-) A-I      intronic
chr13:32980208(-) A-I      intronic
chr13:32980168(-) A-I      intronic
chr13:32986681(-) A-I      intronic
chr13:32979525(-) A-I      intronic
chr13:32980145(-) A-I      intronic
chr13:32988238(-) A-I      intronic
chr13:32979590(-) A-I      intronic
chr13:32980107(-) A-I      intronic
chr13:32979443(-) A-I      intronic
chr13:32986641(-) A-I      intronic
chr13:32986598(-) A-I      intronic
chr13:32979515(-) A-I      intronic
chr13:32980033(-) A-I      intronic
chr13:32979435(-) A-I      intronic
chr13:32988232(-) A-I      intronic
chr13:32988195(-) A-I      intronic
chr13:32980032(-) A-I      intronic
chr13:32988095(-) A-I      intronic
chr13:32980780(-) A-I      intronic
chr13:32980031(-) A-I      intronic
chr13:32979571(-) A-I      intronic
chr13:32979499(-) A-I      intronic
chr13:32979455(-) A-I      intronic
chr13:32979560(-) A-I      intronic
chr13:32986701(-) A-I      intronic
chr13:32980318(-) A-I      intronic
chr13:32979641(-) A-I      intronic
chr13:32979444(-) A-I      intronic
chr13:32980888(-) A-I      intronic
chr13:32979403(-) A-I      intronic
chr13:32979484(-) A-I      intronic
chr13:32987171(-) A-I      intronic
chr13:32979564(-) A-I      intronic
chr13:32979481(-) A-I      intronic
chr13:32986720(-) A-I      intronic
chr13:32980763(-) A-I      intronic
chr13:32986572(-) A-I      intronic
chr13:32979585(-) A-I      intronic
chr13:32979402(-) A-I      intronic
chr13:32980319(-) A-I      intronic
chr13:32979381(-) A-I      intronic
chr13:32980902(-) A-I      intronic
chr13:32979490(-) A-I      intronic
chr13:32979621(-) A-I      intronic
chr13:32988308(-) A-I      intronic
chr13:32979523(-) A-I      intronic
chr13:32979595(-) A-I      intronic
chr13:32980879(-) A-I      intronic
chr13:32986642(-) A-I      intronic
chr13:32980820(-) A-I      intronic
chr13:32980825(-) A-I      intronic
chr13:32979442(-) A-I      intronic
chr13:32988157(-) A-I      intronic
chr13:32979425(-) A-I      intronic
chr13:32979565(-) A-I      intronic
chr13:32979603(-) A-I      intronic
chr13:32979609(-) A-I      intronic
chr13:32980834(-) A-I      intronic
chr13:32979390(-) A-I      intronic
chr13:32979639(-) A-I      intronic
chr13:32986601(-) A-I      intronic
chr13:32979547(-) A-I      intronic
chr13:32980839(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED N4BP2L1
chr13:32979585(-) A-I intron -    22327324
chr13:32980745(-) A-I intron -    22327324
chr13:32980902(-) A-I intron -    22327324
chr13:32986642(-) A-I intron -    22327324
chr13:32979525(-) A-G intron -    22484847
chr13:32979535(-) A-G intron -    22484847
chr13:32979547(-) A-G intron -    22484847
chr13:32979585(-) A-G intron -    22484847
chr13:32979639(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase N4BP2L1
chr13:32975799-32975800(-) m6A 3'UTR       27773535
chr13:32975999-32976000(-) m6A 3'UTR       27773535
chr13:32976004-32976005(-) m6A 3'UTR       27773535
chr13:32977151-32977152(-) m6A 3'UTR//CDS//intron       25456834//28052920//27773535//27371828//22608085
chr13:32977214-32977215(-) m6A 3'UTR//CDS//intron       25456834//28052920//27773535//27371828//22608085
chr13:32977220-32977221(-) m6A 3'UTR//CDS//intron       25456834//28052920//27773535//27371828//22608085
chr13:32977226-32977227(-) m6A 3'UTR//CDS//intron       25456834//28052920//27773535//27371828//22608085
chr13:32977279-32977280(-) m6A 3'UTR//CDS//intron       25456834//28052920//27773535//27371828//22608085
chr13:32977331-32977332(-) m6A 3'UTR//CDS       27773535//27371828
chr13:32977817-32977818(-) m6A CDS//intron       27773535//27371828
chr13:32977867-32977868(-) m6A CDS//intron       27371828
chr13:32980915-32980916(-) m6A exon//intron       -
chr13:33002211-33002212(-) m6A CDS       -
chr13:33002250-33002251(-) m6A 5'UTR       -
chr13:33002271-33002272(-) m6A 5'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-29b-1-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Skeletal muscle myoblasts     21637849
N4BP2L1
Exosome Blood     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-29b-1-5p
Interactor2: N4BP2L1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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