Detail Information

Basic Information:


  VIRBase ID:  

HHID00064280

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-29b-1-5p:           ZNF160:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-29b-1-5p ZNF160
miRBase
Accession/Entrez ID		 MIMAT0004514 90338
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - F11//HKr18//HZF5//KR18

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-29b-1-5p
rs1189550020 chr7:130877522    G/GA
rs1554489373 chr7:130877519    T/C
rs1554489375 chr7:130877520    A/C
rs782109811 chr7:130877509    TA/T
rs778204762 chr7:130877526    C/A
rs778204762 chr7:130877526    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZNF160
chr19:53583499(-) A-I      intronic
chr19:53581729(-) A-I      intronic
chr19:53575528(-) A-I      intronic
chr19:53592494(-) A-I      intronic
chr19:53595675(-) A-I      intronic
chr19:53595669(-) A-I      intronic
chr19:53586240(-) A-I      intronic
chr19:53595685(-) A-I      intronic
chr19:53585828(-) A-I      intronic
chr19:53574256(-) A-I      intronic
chr19:53574192(-) A-I      intronic
chr19:53574063(-) A-I      intronic
chr19:53582582(-) A-I      intronic
chr19:53573913(-) A-I      intronic
chr19:53573895(-) A-I      intronic
chr19:53588323(-) A-I      intronic
chr19:53588322(-) A-I      intronic
chr19:53588275(-) A-I      intronic
chr19:53588208(-) A-I      intronic
chr19:53587020(-) A-I      intronic
chr19:53590941(-) A-I      intronic
chr19:53590915(-) A-I      intronic
chr19:53576042(-) A-I      intronic
chr19:53590942(-) A-I      intronic
chr19:53591069(-) A-I      intronic
chr19:53591690(-) A-I      intronic
chr19:53591754(-) A-I      intronic
chr19:53594422(-) A-I      intronic
chr19:53594515(-) A-I      intronic
chr19:53595677(-) A-I      intronic
chr19:53596476(-) A-I      intronic
chr19:53596892(-) A-I      intronic
chr19:53586922(-) A-I      intronic
chr19:53585917(-) A-I      intronic
chr19:53585840(-) A-I      intronic
chr19:53585804(-) A-I      intronic
chr19:53583571(-) A-I      intronic
chr19:53583559(-) A-I      intronic
chr19:53583547(-) A-I      intronic
chr19:53583545(-) A-I      intronic
chr19:53583527(-) A-I      intronic
chr19:53583525(-) A-I      intronic
chr19:53583521(-) A-I      intronic
chr19:53583517(-) A-I      intronic
chr19:53583457(-) A-I      intronic
chr19:53583388(-) A-I      intronic
chr19:53573862(-) A-I      intronic
chr19:53582703(-) A-I      intronic
chr19:53582668(-) A-I      intronic
chr19:53582578(-) A-I      intronic
chr19:53581782(-) A-I      intronic
chr19:53579870(-) A-I      intronic
chr19:53579792(-) A-I      intronic
chr19:53579729(-) A-I      intronic
chr19:53579689(-) A-I      intronic
chr19:53579675(-) A-I      intronic
chr19:53576047(-) A-I      intronic
chr19:53576041(-) A-I      intronic
chr19:53575995(-) A-I      intronic
chr19:53575879(-) A-I      intronic
chr19:53575640(-) A-I      intronic
chr19:53575634(-) A-I      intronic
chr19:53575428(-) A-I      intronic
chr19:53575427(-) A-I      intronic
chr19:53575409(-) A-I      intronic
chr19:53575385(-) A-I      intronic
chr19:53575355(-) A-I      intronic
chr19:53574683(-) A-I      intronic
chr19:53574661(-) A-I      intronic
chr19:53574649(-) A-I      intronic
chr19:53574632(-) A-I      intronic
chr19:53574405(-) A-I      intronic
chr19:53574366(-) A-I      intronic
chr19:53574327(-) A-I      intronic
chr19:53574373(-) A-I      intronic
chr19:53583490(-) A-I      intronic
chr19:53583448(-) A-I      intronic
chr19:53575493(-) A-I      intronic
chr19:53586935(-) A-I      intronic
chr19:53588298(-) A-I      intronic
chr19:53595692(-) A-I      intronic
chr19:53582552(-) A-I      intronic
chr19:53583437(-) A-I      intronic
chr19:53581838(-) A-I      intronic
chr19:53577246(-) A-I      intronic
chr19:53595728(-) A-I      intronic
chr19:53588344(-) A-I      intronic
chr19:53591666(-) A-I      intronic
chr19:53574337(-) A-I      intronic
chr19:53577247(-) A-I      intronic
chr19:53583463(-) A-I      intronic
chr19:53573872(-) A-I      intronic
chr19:53582547(-) A-I      intronic
chr19:53591086(-) A-I      intronic
chr19:53587038(-) A-I      intronic
chr19:53575582(-) A-I      intronic
chr19:53574105(-) A-I      intronic
chr19:53585756(-) A-I      intronic
chr19:53586981(-) A-I      intronic
chr19:53585919(-) A-I      intronic
chr19:53579878(-) A-I      intronic
chr19:53574060(-) A-I      intronic
chr19:53575628(-) A-I      intronic
chr19:53581747(-) A-I      intronic
chr19:53576102(-) A-I      intronic
chr19:53586949(-) A-I      intronic
chr19:53591080(-) A-I      intronic
chr19:53595631(-) A-I      intronic
chr19:53575942(-) A-I      intronic
chr19:53581260(-) A-I      intronic
chr19:53582681(-) A-I      intronic
chr19:53582694(-) A-I      intronic
chr19:53591705(-) A-I      intronic
chr19:53596949(-) A-I      intronic
chr19:53579810(-) A-I      intronic
chr19:53595702(-) A-I      intronic
chr19:53591078(-) A-I      intronic
chr19:53583570(-) A-I      intronic
chr19:53588351(-) A-I      intronic
chr19:53581568(-) A-I      intronic
chr19:53575982(-) A-I      intronic
chr19:53581846(-) A-I      intronic
chr19:53583477(-) A-I      intronic
chr19:53583167(-) A-I      intronic
chr19:53591667(-) A-I      intronic
chr19:53586909(-) A-I      intronic
chr19:53591708(-) A-I      intronic
chr19:53585811(-) A-I      intronic
chr19:53583397(-) A-I      intronic
chr19:53582636(-) A-I      intronic
chr19:53591077(-) A-I      intronic
chr19:53575558(-) A-I      intronic
chr19:53570301(-) A-I      3'UTR
chr19:53585779(-) A-I      intronic
chr19:53575913(-) A-I      intronic
chr19:53570167(-) A-I      3'UTR
chr19:53577177(-) A-I      intronic
chr19:53596616(-) A-I      intronic
chr19:53576019(-) A-I      intronic
chr19:53575503(-) A-I      intronic
chr19:53570306(-) A-I      3'UTR
chr19:53581663(-) A-I      intronic
chr19:53585810(-) A-I      intronic
chr19:53574194(-) A-I      intronic
chr19:53583449(-) A-I      intronic
chr19:53591691(-) A-I      intronic
chr19:53583624(-) A-I      intronic
chr19:53595853(-) A-I      intronic
chr19:53583491(-) A-I      intronic
chr19:53583473(-) A-I      intronic
chr19:53570307(-) A-I      3'UTR
chr19:53570199(-) A-I      3'UTR
chr19:53574728(-) A-I      intronic
chr19:53574221(-) A-I      intronic
chr19:53575519(-) A-I      intronic
chr19:53583485(-) A-I      intronic
chr19:53582720(-) A-I      intronic
chr19:53583120(-) A-I      intronic
chr19:53583386(-) A-I      intronic
chr19:53581250(-) A-I      intronic
chr19:53575431(-) A-I      intronic
chr19:53585678(-) A-I      intronic
chr19:53575361(-) A-I      intronic
chr19:53575423(-) A-I      intronic
chr19:53583387(-) A-I      intronic
chr19:53594384(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZNF160
chr19:53570027(-) A-I exon 3'UTR    15258596
chr19:53570167(-) A-I exon 3'UTR    15258596
chr19:53570306(-) A-I exon 3'UTR    15258596
chr19:53570307(-) A-I exon 3'UTR    15342557   //15258596
chr19:53571306(-) A-I exon 3'UTR    15342557
chr19:53578720(-) A-I intron -    21960545   //22327324
chr19:53579041(-) A-I intron -    21960545   //22327324
chr19:53579185(-) A-I intron -    21960545   //22327324
chr19:53586086(-) A-I intron -    22327324
chr19:53586156(-) A-I intron -    22327324
chr19:53586263(-) A-I intron -    22327324
chr19:53591080(-) A-I intron -    22327324
chr19:53591691(-) A-I intron -    21960545   //22327324
chr19:53592162(-) A-I intron -    21960545   //22327324
chr19:53592163(-) A-I intron -    21960545   //22327324
chr19:53578668(-) A-I intron -    21960545
chr19:53578799(-) A-I intron -    21960545
chr19:53578983(-) A-I intron -    21960545
chr19:53579113(-) A-I intron -    21960545
chr19:53579179(-) A-I intron -    21960545
chr19:53583167(-) A-I intron -    21960545
chr19:53585763(-) A-I intron -    21960545
chr19:53586079(-) A-I intron -    21960545
chr19:53586262(-) A-I intron -    21960545
chr19:53586272(-) A-I intron -    21960545
chr19:53586470(-) A-I intron -    21960545
chr19:53586548(-) A-I intron -    21960545
chr19:53586568(-) A-I intron -    21960545
chr19:53586639(-) A-I intron -    21960545
chr19:53586909(-) A-I intron -    21960545
chr19:53586981(-) A-I intron -    21960545
chr19:53587980(-) A-I intron -    21960545
chr19:53591666(-) A-I intron -    21960545
chr19:53591708(-) A-I intron -    21960545
chr19:53591734(-) A-I intron -    21960545
chr19:53592104(-) A-I intron -    21960545
chr19:53592116(-) A-I intron -    21960545
chr19:53578720(-) A-G intron -    22484847
chr19:53579041(-) A-G intron -    22484847
chr19:53579086(-) A-G intron -    22484847
chr19:53579179(-) A-G intron -    22484847
chr19:53579185(-) A-G intron -    22484847
chr19:53579245(-) A-G intron -    22484847
chr19:53586086(-) A-G intron -    22484847
chr19:53586156(-) A-G intron -    22484847
chr19:53586216(-) A-G intron -    22484847
chr19:53586263(-) A-G intron -    22484847
chr19:53586548(-) A-G intron -    22484847
chr19:53592162(-) A-G intron -    22484847
chr19:53592163(-) A-G intron -    22484847
chr19:53570085(-) C-T exon 3'UTR    22484847
chr19:53570173(-) A-G exon 3'UTR    22484847
chr19:53570199(-) A-G exon 3'UTR    22484847
chr19:53574719(-) A-G intron -    22484847
chr19:53574728(-) A-G intron -    22484847
chr19:53579659(-) C-T intron -    22484847
chr19:53582570(-) T-C intron -    22484847
chr19:53582575(-) T-C intron -    22484847
chr19:53583437(-) A-G intron -    22484847
chr19:53585806(-) A-G intron -    22484847
chr19:53585810(-) A-G intron -    22484847
chr19:53585811(-) A-G intron -    22484847
chr19:53588327(-) A-G intron -    22484847
chr19:53588351(-) A-G intron -    22484847
chr19:53591077(-) A-G intron -    22484847
chr19:53591080(-) A-G intron -    22484847
chr19:53591666(-) A-G intron -    22484847
chr19:53591691(-) A-G intron -    22484847
chr19:53591708(-) A-G intron -    22484847
chr19:53591734(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF160
chr19:53569964-53569965(-) m6A 3'UTR       27773535//27371828
chr19:53570035-53570036(-) m6A 3'UTR       24981863//27773535//27371828
chr19:53570061-53570062(-) m6A 3'UTR       24981863//27773535//27371828
chr19:53570066-53570067(-) m6A 3'UTR       24981863//27773535//27371828
chr19:53570131-53570132(-) m6A 3'UTR       27371828
chr19:53570455-53570456(-) m6A 3'UTR       24981863//27773535
chr19:53570495-53570496(-) m6A 3'UTR       24981863//27773535//27371828
chr19:53570503-53570504(-) m6A 3'UTR       24981863//27773535//27371828
chr19:53570525-53570526(-) m6A 3'UTR       24981863//27773535//27371828//22608085
chr19:53570622-53570623(-) m6A 3'UTR       27773535//27371828//22608085
chr19:53570632-53570633(-) m6A 3'UTR       27773535//27371828//22608085
chr19:53570686-53570687(-) m6A 3'UTR       27773535
chr19:53571102-53571103(-) m6A 3'UTR       24981863//27773535
chr19:53571176-53571177(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr19:53571187-53571188(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr19:53571341-53571342(-) m6A CDS       27773535//27371828
chr19:53571509-53571510(-) m6A CDS       24284625//24981863//27773535//27371828
chr19:53571593-53571594(-) m6A CDS       24284625//24981863//28052920//27773535//27371828
chr19:53571677-53571678(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr19:53571694-53571695(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr19:53571720-53571721(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr19:53571798-53571799(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//22608085
chr19:53571845-53571846(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr19:53571929-53571930(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//22575960//22608085
chr19:53572013-53572014(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//22608085
chr19:53572057-53572058(-) m6A CDS       27371828
chr19:53572349-53572350(-) m6A CDS       27773535//27371828
chr19:53572354-53572355(-) m6A CDS       27773535//27371828
chr19:53572386-53572387(-) m6A CDS       27773535//27371828
chr19:53572433-53572434(-) m6A CDS       27773535//27371828
chr19:53572517-53572518(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr19:53572537-53572538(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr19:53572601-53572602(-) m6A CDS       24284625//24981863//28052920//27773535//22608085
chr19:53572685-53572686(-) m6A CDS       24284625//24981863//28052920//27773535//22608085
chr19:53572722-53572723(-) m6A CDS       24284625//24981863//28052920//27773535//22608085
chr19:53572730-53572731(-) m6A CDS       24284625//24981863//28052920//27773535//22608085
chr19:53572769-53572770(-) m6A CDS       24284625//24981863//28052920//27773535//22608085
chr19:53572853-53572854(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr19:53572909-53572910(-) m6A CDS       24284625//24981863//27773535//27371828//22575960//22608085
chr19:53572974-53572975(-) m6A CDS       24284625//24981863//27773535//27371828//22575960//22608085
chr19:53573021-53573022(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//22575960//22608085
chr19:53573034-53573035(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//22575960//22608085
chr19:53573075-53573076(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr19:53573101-53573102(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr19:53573213-53573214(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr19:53573253-53573254(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr19:53573265-53573266(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr19:53573274-53573275(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr19:53573387-53573388(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr19:53573403-53573404(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr19:53573426-53573427(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr19:53576143-53576144(-) m6A 3'UTR//intron       24284625//24981863//27773535//27371828
chr19:53577429-53577430(-) m6A CDS       27773535
chr19:53577461-53577462(-) m6A CDS       27773535
chr19:53578323-53578324(-) m6A CDS       27773535
chr19:53578332-53578333(-) m6A CDS       27773535
chr19:53588911-53588912(-) m6A exon//intron       27773535
chr19:53588999-53589000(-) m6A exon//intron       27773535//27371828
chr19:53589017-53589018(-) m6A exon//intron       27773535//27371828
chr19:53589024-53589025(-) m6A exon//intron       27773535//27371828
chr19:53589034-53589035(-) m6A exon//intron       27773535//27371828
chr19:53589064-53589065(-) m6A exon//intron       27773535//27371828
chr19:53589115-53589116(-) m6A exon//intron       27773535//27371828
chr19:53589181-53589182(-) m6A exon//intron       25456834//27371828
chr19:53589281-53589282(-) m6A exon//intron       25456834//27371828
chr19:53589332-53589333(-) m6A exon//intron       25456834//27371828
chr19:53594954-53594955(-) m6A 5'UTR//exon       -
chr19:53606550-53606551(-) m6A 5'UTR//exon       24981863
chr19:53606609-53606610(-) m6A 5'UTR//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-29b-1-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Skeletal muscle myoblasts     21637849
ZNF160
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-29b-1-5p
Interactor2: ZNF160

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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