Detail Information

Basic Information:


  VIRBase ID:  

HHID00064274

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-29b-1-5p:           AMMECR1L:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-29b-1-5p AMMECR1L
miRBase
Accession/Entrez ID		 MIMAT0004514 83607
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-29b-1-5p
rs1189550020 chr7:130877522    G/GA
rs1554489373 chr7:130877519    T/C
rs1554489375 chr7:130877520    A/C
rs782109811 chr7:130877509    TA/T
rs778204762 chr7:130877526    C/A
rs778204762 chr7:130877526    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR AMMECR1L
chr2:128625555(-) A-I      intronic
chr2:128625544(-) A-I      intronic
chr2:128625519(-) A-I      intronic
chr2:128625549(-) A-I      intronic
chr2:128626564(-) A-I      intronic
chr2:128625613(-) A-I      intronic
chr2:128635551(-) A-I      intronic
chr2:128635141(-) A-I      intronic
chr2:128635129(-) A-I      intronic
chr2:128626445(-) A-I      intronic
chr2:128633824(-) A-I      intronic
chr2:128633441(-) A-I      intronic
chr2:128633425(-) A-I      intronic
chr2:128629561(-) A-I      intronic
chr2:128627941(-) A-I      intronic
chr2:128627585(-) A-I      intronic
chr2:128626532(-) A-I      intronic
chr2:128626531(-) A-I      intronic
chr2:128626525(-) A-I      intronic
chr2:128626503(-) A-I      intronic
chr2:128626476(-) A-I      intronic
chr2:128626467(-) A-I      intronic
chr2:128626404(-) A-I      intronic
chr2:128626463(-) A-I      intronic
chr2:128626437(-) A-I      intronic
chr2:128626391(-) A-I      intronic
chr2:128625173(-) A-I      intronic
chr2:128625086(-) A-I      intronic
chr2:128635089(-) A-I      intronic
chr2:128633800(-) A-I      intronic
chr2:128635571(-) A-I      intronic
chr2:128625547(-) A-I      intronic
chr2:128625593(-) A-I      intronic
chr2:128625595(-) A-I      intronic
chr2:128626367(-) A-I      intronic
chr2:128627591(-) A-I      intronic
chr2:128627634(-) A-I      intronic
chr2:128625514(-) A-I      intronic
chr2:128625617(-) A-I      intronic
chr2:128633802(-) A-I      intronic
chr2:128625661(-) A-I      intronic
chr2:128629641(-) A-I      intronic
chr2:128625586(-) A-I      intronic
chr2:128626572(-) A-I      intronic
chr2:128625625(-) A-I      intronic
chr2:128633488(-) A-I      intronic
chr2:128625287(-) A-I      intronic
chr2:128625581(-) A-I      intronic
chr2:128625319(-) A-I      intronic
chr2:128627789(-) A-I      intronic
chr2:128629606(-) A-I      intronic
chr2:128637620(-) A-I      intronic
chr2:128633815(-) A-I      intronic
chr2:128625225(-) A-I      intronic
chr2:128626569(-) A-I      intronic
chr2:128625318(-) A-I      intronic
chr2:128629876(-) A-I      intronic
chr2:128633522(-) A-I      intronic
chr2:128625142(-) A-I      intronic
chr2:128629680(-) A-I      intronic
chr2:128625674(-) A-I      intronic
chr2:128625172(-) A-I      intronic
chr2:128625621(-) A-I      intronic
chr2:128625679(-) A-I      intronic
chr2:128626477(-) A-I      intronic
chr2:128629545(-) A-I      intronic
chr2:128634010(-) A-I      intronic
chr2:128626353(-) A-I      intronic
chr2:128635006(-) A-I      intronic
chr2:128625722(-) A-I      intronic
chr2:128628007(-) A-I      intronic
chr2:128629546(-) A-I      intronic
chr2:128625103(-) A-I      intronic
chr2:128625155(-) A-I      intronic
chr2:128625238(-) A-I      intronic
chr2:128627927(-) A-I      intronic
chr2:128625618(-) A-I      intronic
chr2:128627509(-) A-I      intronic
chr2:128635417(-) A-I      intronic
chr2:128626592(-) A-I      intronic
chr2:128626366(-) A-I      intronic
chr2:128635564(-) A-I      intronic
chr2:128625536(-) A-I      intronic
chr2:128625579(-) A-I      intronic
chr2:128625136(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED AMMECR1L
chr2:128625155(-) A-G intron -    22484847
chr2:128625158(-) A-G intron -    22484847
chr2:128625225(-) A-G intron -    22484847
chr2:128625238(-) A-G intron -    22484847
chr2:128625287(-) A-G intron -    22484847
chr2:128625679(-) A-G intron -    22484847
chr2:128625722(-) A-G intron -    22484847
chr2:128626572(-) A-G intron -    22484847
chr2:128629545(-) A-G intron -    22484847
chr2:128629546(-) A-G intron -    22484847
chr2:128629641(-) A-G intron -    22484847
chr2:128629680(-) A-G intron -    22484847
chr2:128633488(-) A-G intron -    22484847
chr2:128633506(-) A-G intron -    22484847
chr2:128633522(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase AMMECR1L
chr2:128619248-128619249(-) m6A 3'UTR       24981863//27773535//22608085
chr2:128619312-128619313(-) m6A 3'UTR       24981863//27773535//22608085
chr2:128619319-128619320(-) m6A 3'UTR       24981863//27773535//22608085
chr2:128619342-128619343(-) m6A 3'UTR       24981863//27773535//22608085
chr2:128619988-128619989(-) m6A 3'UTR       24284625
chr2:128619993-128619994(-) m6A 3'UTR       24284625
chr2:128619999-128620000(-) m6A 3'UTR       24284625
chr2:128620602-128620603(-) m6A 3'UTR       27773535
chr2:128620734-128620735(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr2:128620954-128620955(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:128621051-128621052(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:128621191-128621192(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr2:128621224-128621225(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr2:128621347-128621348(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:128621355-128621356(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:128621469-128621470(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr2:128621553-128621554(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr2:128621578-128621579(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr2:128621588-128621589(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr2:128621615-128621616(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr2:128621730-128621731(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:128621758-128621759(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:128621788-128621789(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:128621847-128621848(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:128621945-128621946(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:128622082-128622083(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr2:128622088-128622089(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr2:128622195-128622196(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr2:128622229-128622230(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:128622237-128622238(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:128622306-128622307(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:128622381-128622382(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:128622481-128622482(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:128622486-128622487(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:128624481-128624482(-) m6A CDS       27773535
chr2:128624545-128624546(-) m6A CDS       27773535
chr2:128624552-128624553(-) m6A CDS       27773535
chr2:128627031-128627032(-) m6A CDS       27773535
chr2:128628490-128628491(-) m6A CDS       27773535
chr2:128628845-128628846(-) m6A CDS       27773535
chr2:128628874-128628875(-) m6A CDS       27773535
chr2:128628900-128628901(-) m6A CDS       24284625//27773535
chr2:128628910-128628911(-) m6A CDS       24284625//27773535
chr2:128631525-128631526(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:128631590-128631591(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:128631598-128631599(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:128631611-128631612(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:128631641-128631642(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:128631656-128631657(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:128631667-128631668(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:128631827-128631828(-) m6A 5'UTR       24284625
chr2:128641789-128641790(-) m6A 5'UTR       24284625
chr2:128641837-128641838(-) m6A 5'UTR       24284625//27371828
chr2:128642399-128642400(-) m6A 5'UTR//intron       24981863//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-29b-1-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Skeletal muscle myoblasts     21637849
AMMECR1L
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-29b-1-5p
Interactor2: AMMECR1L

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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