Detail Information

Basic Information:


  VIRBase ID:  

HHID00064273

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-29b-1-5p:           ISG20L2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-29b-1-5p ISG20L2
miRBase
Accession/Entrez ID		 MIMAT0004514 81875
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - HSD38

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-29b-1-5p
rs1189550020 chr7:130877522    G/GA
rs1554489373 chr7:130877519    T/C
rs1554489375 chr7:130877520    A/C
rs782109811 chr7:130877509    TA/T
rs778204762 chr7:130877526    C/A
rs778204762 chr7:130877526    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ISG20L2
chr1:156692575(-) A-I      3'UTR
chr1:156692603(-) A-I      3'UTR
chr1:156692602(-) A-I      3'UTR
chr1:156692576(-) A-I      3'UTR
chr1:156692623(-) A-I      3'UTR
chr1:156692618(-) A-I      3'UTR
chr1:156694773(-) A-I      ncRNA
chr1:156694798(-) A-I      ncRNA
chr1:156692626(-) A-I      3'UTR
chr1:156692594(-) A-I      3'UTR
chr1:156692566(-) A-I      3'UTR
chr1:156692655(-) A-I      3'UTR
chr1:156692521(-) A-I      3'UTR

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ISG20L2
chr1:156692614-156692615(-) m6A 3'UTR//exon       24209618
chr1:156692918-156692919(-) m6A 3'UTR//exon       24284625//24209618//27773535//22608085
chr1:156693005-156693006(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:156693067-156693068(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:156693075-156693076(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:156693087-156693088(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:156693144-156693145(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:156693239-156693240(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:156693874-156693875(-) m6A exon//intron       24284625//27773535
chr1:156693903-156693904(-) m6A exon//intron       24284625
chr1:156693952-156693953(-) m6A CDS//exon       24284625//22575960
chr1:156694286-156694287(-) m6A exon//intron       24284625//27773535
chr1:156694345-156694346(-) m6A exon//intron       24284625//24209618//27773535
chr1:156695606-156695607(-) m6A exon//intron       24284625//24981863//27773535
chr1:156696765-156696766(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:156696773-156696774(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr1:156696874-156696875(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr1:156696971-156696972(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:156696998-156696999(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:156697166-156697167(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr1:156697177-156697178(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr1:156697203-156697204(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr1:156697227-156697228(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr1:156697254-156697255(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr1:156697273-156697274(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr1:156697310-156697311(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr1:156697408-156697409(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr1:156697533-156697534(-) m6A 5'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr1:156697548-156697549(-) m6A 5'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr1:156697772-156697773(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:156697801-156697802(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:156697807-156697808(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:156697862-156697863(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:156698073-156698074(-) m6A 5'UTR//intron       24284625//24209618//25456834//22608085
chr1:156698218-156698219(-) m6A 5'UTR//exon       24284625//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-29b-1-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Skeletal muscle myoblasts     21637849
ISG20L2
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-29b-1-5p
Interactor2: ISG20L2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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