Detail Information

Basic Information:


  VIRBase ID:  

HHID00064223

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-29b-1-5p:           CBX6:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-29b-1-5p CBX6
miRBase
Accession/Entrez ID		 MIMAT0004514 23466
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-29b-1-5p
rs1189550020 chr7:130877522    G/GA
rs1554489373 chr7:130877519    T/C
rs1554489375 chr7:130877520    A/C
rs782109811 chr7:130877509    TA/T
rs778204762 chr7:130877526    C/A
rs778204762 chr7:130877526    C/T

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CBX6
chr22:39258645-39258646(-) m6A 3'UTR       27371828
chr22:39258655-39258656(-) m6A 3'UTR       27371828//27773536
chr22:39258684-39258685(-) m6A 3'UTR       27371828//27773536
chr22:39258795-39258796(-) m6A 3'UTR       27371828//27773536
chr22:39258872-39258873(-) m6A 3'UTR       24981863//26404942//27773535//27371828
chr22:39258958-39258959(-) m6A 3'UTR       27773535//27371828
chr22:39259559-39259560(-) m6A 3'UTR       24284625
chr22:39259821-39259822(-) m6A 3'UTR       -
chr22:39260011-39260012(-) m6A 3'UTR       24209618//27773536
chr22:39260049-39260050(-) m6A 3'UTR       24209618//24981863//27773535//27773536
chr22:39260250-39260251(-) m6A 3'UTR       24981863//27773535
chr22:39260256-39260257(-) m6A 3'UTR       24981863//27773535
chr22:39260835-39260836(-) m6A 3'UTR       24284625
chr22:39261161-39261162(-) m6A 3'UTR       24284625
chr22:39261179-39261180(-) m6A 3'UTR       24284625//24981863
chr22:39261204-39261205(-) m6A 3'UTR       24284625//24981863
chr22:39261329-39261330(-) m6A 3'UTR       24284625//24981863
chr22:39261357-39261358(-) m6A 3'UTR       24284625//24981863
chr22:39261378-39261379(-) m6A 3'UTR       24284625//24981863
chr22:39261486-39261487(-) m6A 3'UTR       24284625//22575960
chr22:39261499-39261500(-) m6A 3'UTR       24284625//22575960
chr22:39261577-39261578(-) m6A 3'UTR       24284625//24981863//22575960
chr22:39261635-39261636(-) m6A 3'UTR       24284625//24981863//22575960
chr22:39261951-39261952(-) m6A 3'UTR       24284625
chr22:39262382-39262383(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr22:39262557-39262558(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr22:39262835-39262836(-) m6A CDS       24284625//24209618//24981863//27371828//27773536//22575960//22608085
chr22:39262922-39262923(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27371828//27773536//22575960//22608085
chr22:39262937-39262938(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27371828//27773536//22575960//22608085
chr22:39263017-39263018(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr22:39263039-39263040(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr22:39263087-39263088(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr22:39265582-39265583(-) m6A exon//intron       24284625//24209618//27371828//27773536
chr22:39265636-39265637(-) m6A exon//intron       24209618//27371828//27773536
chr22:39266820-39266821(-) m6A exon//intron       -
chr22:39267406-39267407(-) m6A exon//intron       27773536
chr22:39267498-39267499(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536
chr22:39267505-39267506(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536
chr22:39267511-39267512(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536
chr22:39267523-39267524(-) Y CDS//exon       26075521
chr22:39267701-39267702(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536
chr22:39267726-39267727(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536
chr22:39267735-39267736(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-29b-1-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Skeletal muscle myoblasts     21637849
CBX6
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-29b-1-5p
Interactor2: CBX6

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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