Detail Information

Basic Information:


  VIRBase ID:  

HHID00063636

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-29a-5p:           C18orf32:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-29a-5p C18orf32
miRBase
Accession/Entrez ID		 MIMAT0004503 497661
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-29a-5p
rs1419063786 chr7:130876796    A/G
rs782312117 chr7:130876789    A/G
rs1380872787 chr7:130876800    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR C18orf32
chr18:47012219(-) A-I      intronic
chr18:47012202(-) A-I      intronic
chr18:47008917(-) A-I      intronic
chr18:47008905(-) A-I      intronic
chr18:47008909(-) A-I      intronic
chr18:47011800(-) A-I      intronic
chr18:47008969(-) A-I      intronic
chr18:47011802(-) A-I      intronic
chr18:47009071(-) A-I      intronic
chr18:47009088(-) A-I      intronic
chr18:47009229(-) A-I      intronic
chr18:47011842(-) A-I      intronic
chr18:47009385(-) A-I      intronic
chr18:47008864(-) A-I      intronic
chr18:47009313(-) A-I      intronic
chr18:47010455(-) A-I      intronic
chr18:47010387(-) A-I      intronic
chr18:47009342(-) A-I      intronic
chr18:47012116(-) A-I      intronic
chr18:47009265(-) A-I      intronic
chr18:47008931(-) A-I      intronic
chr18:47011287(-) A-I      intronic
chr18:47009351(-) A-I      intronic
chr18:47012103(-) A-I      intronic
chr18:47009333(-) A-I      intronic
chr18:47010308(-) A-I      intronic
chr18:47008997(-) A-I      intronic
chr18:47012264(-) A-I      intronic
chr18:47012195(-) A-I      intronic
chr18:47011389(-) A-I      intronic
chr18:47010861(-) A-I      intronic
chr18:47009089(-) A-I      intronic
chr18:47012015(-) A-I      intronic
chr18:47009455(-) A-I      intronic
chr18:47009450(-) A-I      intronic
chr18:47009345(-) A-I      intronic
chr18:47012265(-) A-I      intronic
chr18:47009372(-) A-I      intronic
chr18:47008836(-) A-I      intronic
chr18:47012180(-) A-I      intronic
chr18:47011752(-) A-I      intronic
chr18:47011290(-) A-I      intronic
chr18:47008842(-) A-I      intronic
chr18:47012080(-) A-I      intronic
chr18:47008934(-) A-I      intronic
chr18:47009297(-) A-I      intronic
chr18:47009433(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase C18orf32
chr18:47008621-47008622(-) m6A 3'UTR       24981863//22608085
chr18:47008675-47008676(-) m6A 3'UTR       24284625//24981863//28052920//22608085
chr18:47008696-47008697(-) m6A 3'UTR       24284625//24981863//28052920//22608085
chr18:47008718-47008719(-) m6A CDS       24284625//24981863//28052920//22608085
chr18:47008747-47008748(-) m6A CDS       24284625//24981863//28052920//22608085
chr18:47008772-47008773(-) m6A CDS       24284625//24981863//22608085
chr18:47009960-47009961(-) m6A CDS       24284625//24981863//22608085
chr18:47009975-47009976(-) m6A CDS       24284625//24981863//22608085
chr18:47013605-47013606(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-29a-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells|Urine     -
Mitochondrion Skeletal muscle myoblasts     21637849
C18orf32
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-29a-5p
Interactor2: C18orf32

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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