Detail Information

Basic Information:


  VIRBase ID:  

HHID00063474

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-19b-2-5p:           ZBTB47:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-19b-2-5p ZBTB47
miRBase
Accession/Entrez ID		 MIMAT0004492 92999
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - ZNF651

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-19b-2-5p
rs193073651 chrX:134169728    G/A
rs749008511 chrX:134169737    A/C
rs755951722 chrX:134169731    A/G
rs779795647 chrX:134169732    T/C
rs747654746 chrX:134169746    A/G
rs754566533 chrX:134169743    A/G
rs778397250 chrX:134169744    A/G

RNA Editing:


Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZBTB47
chr3:42700630(+) A-I exon CDS    21960545

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZBTB47
chr3:42699781-42699782(+) m6A 5'UTR       24284625
chr3:42699899-42699900(+) m6A CDS       24284625//22575960
chr3:42699992-42699993(+) m6A CDS       24284625//22575960
chr3:42700363-42700364(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr3:42700562-42700563(+) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr3:42700576-42700577(+) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr3:42700668-42700669(+) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//22608085
chr3:42700715-42700716(+) m1A 5'UTR//CDS       26863196//26863410
chr3:42700793-42700794(+) m1A CDS//intron       26863196//26863410
chr3:42700955-42700956(+) m6A CDS//intron       24284625//25456834//24981863
chr3:42701022-42701023(+) m6A CDS//intron       24284625//24981863
chr3:42701030-42701031(+) m1A CDS//intron       26863196
chr3:42701205-42701206(+) m6A 5'UTR//CDS       24284625
chr3:42701296-42701297(+) m6A CDS       -
chr3:42705385-42705386(+) m6A CDS       24981863
chr3:42705423-42705424(+) m6A CDS       24981863
chr3:42706000-42706001(+) m6A CDS       24284625//24209618//25456834
chr3:42706149-42706150(+) m6A 3'UTR       24284625//25456834//24981863//22608085
chr3:42706368-42706369(+) m6A 3'UTR       24284625//24981863
chr3:42706615-42706616(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr3:42706655-42706656(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr3:42706660-42706661(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr3:42706702-42706703(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr3:42706709-42706710(+) m6A 3'UTR       24284625//25456834//24981863//22608085
chr3:42706750-42706751(+) m6A 3'UTR       24284625//25456834//24981863//22608085
chr3:42706759-42706760(+) m6A 3'UTR       24284625//25456834//24981863//22608085
chr3:42706888-42706889(+) m6A 3'UTR       -
chr3:42706903-42706904(+) m6A 3'UTR       24981863
chr3:42707071-42707072(+) m6A 3'UTR       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-19b-2-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
ZBTB47
Exosome Blood     -
Membrane K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-19b-2-5p
Interactor2: ZBTB47

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...