Detail Information

Basic Information:


  VIRBase ID:  

HHID00063334

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-19b-2-5p:           TMF1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-19b-2-5p TMF1
miRBase
Accession/Entrez ID		 MIMAT0004492 7110
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - ARA160//TMF

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-19b-2-5p
rs193073651 chrX:134169728    G/A
rs749008511 chrX:134169737    A/C
rs755951722 chrX:134169731    A/G
rs779795647 chrX:134169732    T/C
rs747654746 chrX:134169746    A/G
rs754566533 chrX:134169743    A/G
rs778397250 chrX:134169744    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TMF1
chr3:69076374(-) A-I      intronic
chr3:69076373(-) A-I      intronic
chr3:69076363(-) A-I      intronic
chr3:69076411(-) A-I      intronic
chr3:69076351(-) A-I      intronic
chr3:69076348(-) A-I      intronic
chr3:69076303(-) A-I      intronic
chr3:69076295(-) A-I      intronic
chr3:69076284(-) A-I      intronic
chr3:69076223(-) A-I      intronic
chr3:69075752(-) A-I      intronic
chr3:69075719(-) A-I      intronic
chr3:69075668(-) A-I      intronic
chr3:69075635(-) A-I      intronic
chr3:69075603(-) A-I      intronic
chr3:69075599(-) A-I      intronic
chr3:69075598(-) A-I      intronic
chr3:69075585(-) A-I      intronic
chr3:69075582(-) A-I      intronic
chr3:69075575(-) A-I      intronic
chr3:69075531(-) A-I      intronic
chr3:69075503(-) A-I      intronic
chr3:69081925(-) A-I      intronic
chr3:69075556(-) A-I      intronic
chr3:69091483(-) A-I      intronic
chr3:69091416(-) A-I      intronic
chr3:69091403(-) A-I      intronic
chr3:69091402(-) A-I      intronic
chr3:69088446(-) A-I      intronic
chr3:69088401(-) A-I      intronic
chr3:69086618(-) A-I      intronic
chr3:69083237(-) A-I      intronic
chr3:69083210(-) A-I      intronic
chr3:69083206(-) A-I      intronic
chr3:69082411(-) A-I      intronic
chr3:69082362(-) A-I      intronic
chr3:69082303(-) A-I      intronic
chr3:69082034(-) A-I      intronic
chr3:69081867(-) A-I      intronic
chr3:69081847(-) A-I      intronic
chr3:69076438(-) A-I      intronic
chr3:69076419(-) A-I      intronic
chr3:69075681(-) A-I      intronic
chr3:69076405(-) A-I      intronic
chr3:69076393(-) A-I      intronic
chr3:69071039(-) A-I      3'UTR
chr3:69070899(-) A-I      3'UTR
chr3:69071045(-) A-I      3'UTR
chr3:69070900(-) A-I      3'UTR
chr3:69070996(-) A-I      3'UTR
chr3:69071027(-) A-I      3'UTR
chr3:69071000(-) A-I      3'UTR
chr3:69071014(-) A-I      3'UTR
chr3:69071025(-) A-I      3'UTR
chr3:69071054(-) A-I      3'UTR
chr3:69071005(-) A-I      3'UTR
chr3:69070999(-) A-I      3'UTR
chr3:69071001(-) A-I      3'UTR
chr3:69071062(-) A-I      3'UTR
chr3:69071002(-) A-I      3'UTR
chr3:69083239(-) A-I      intronic
chr3:69081898(-) A-I      intronic
chr3:69075680(-) A-I      intronic
chr3:69100514(-) A-I      intronic
chr3:69076311(-) A-I      intronic
chr3:69070910(-) A-I      3'UTR
chr3:69070943(-) A-I      3'UTR
chr3:69070970(-) A-I      3'UTR
chr3:69070907(-) A-I      3'UTR
chr3:69075560(-) A-I      intronic
chr3:69076426(-) A-I      intronic
chr3:69075555(-) A-I      intronic
chr3:69082058(-) A-I      intronic
chr3:69081899(-) A-I      intronic
chr3:69076350(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TMF1
chr3:69070904(-) A-I exon 3'UTR    15258596
chr3:69070907(-) A-I exon 3'UTR    15258596
chr3:69070910(-) A-I exon 3'UTR    15258596
chr3:69070943(-) A-I exon 3'UTR    15258596
chr3:69070960(-) A-I exon 3'UTR    15258596
chr3:69070969(-) A-I exon 3'UTR    15258596
chr3:69070970(-) A-I exon 3'UTR    15258596

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TMF1
chr3:69069061-69069062(-) m6A 3'UTR       27773535
chr3:69069104-69069105(-) m6A 3'UTR       27773535
chr3:69069113-69069114(-) m6A 3'UTR       27773535
chr3:69070317-69070318(-) m6A 3'UTR       27773535
chr3:69070335-69070336(-) m6A 3'UTR       27773535
chr3:69070349-69070350(-) m6A 3'UTR       27773535
chr3:69072124-69072125(-) m6A 3'UTR       27773535
chr3:69072138-69072139(-) m6A 3'UTR       27773535
chr3:69072262-69072263(-) m6A 3'UTR       24981863//27773535//22608085
chr3:69072275-69072276(-) m6A 3'UTR       24981863//27773535//22608085
chr3:69072301-69072302(-) m6A 3'UTR       24981863//27773535//22608085
chr3:69072342-69072343(-) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:69072351-69072352(-) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:69072365-69072366(-) m6A 3'UTR//CDS       24981863//28052920//27773535//22608085
chr3:69072405-69072406(-) m6A 3'UTR//CDS       24981863//28052920//27773535//22608085
chr3:69073216-69073217(-) m6A 3'UTR//CDS       24981863//28052920//27773535//22608085
chr3:69073223-69073224(-) m6A 3'UTR//CDS       24981863//28052920//27773535//22608085
chr3:69073253-69073254(-) m6A 3'UTR//CDS       24981863//28052920//27773535//22608085
chr3:69073283-69073284(-) m6A 3'UTR//CDS       24981863//28052920//27773535//22608085
chr3:69073306-69073307(-) m6A 3'UTR//CDS       24981863//28052920//27773535//22608085
chr3:69073507-69073508(-) m6A exon//intron       24981863//27773535
chr3:69073542-69073543(-) m6A exon//intron       24981863
chr3:69074759-69074760(-) m6A 3'UTR//CDS//exon       24981863
chr3:69077064-69077065(-) m6A 3'UTR//CDS       24981863//27773535
chr3:69077098-69077099(-) m6A 3'UTR//CDS       24981863//27773535
chr3:69077402-69077403(-) m6A 3'UTR//CDS       24981863//27773535
chr3:69077425-69077426(-) m6A 3'UTR//CDS       24981863//27773535
chr3:69078971-69078972(-) m6A 3'UTR//CDS       24981863//27773535
chr3:69078985-69078986(-) m6A 3'UTR//CDS       24981863//27773535
chr3:69079034-69079035(-) m6A 3'UTR//CDS       24981863//27773535
chr3:69079042-69079043(-) m6A 3'UTR//CDS       24981863//27773535
chr3:69079099-69079100(-) m6A CDS       27773535
chr3:69079146-69079147(-) m6A CDS//intron       27773535
chr3:69082743-69082744(-) m6A CDS//intron       24981863//27773535//27371828
chr3:69082792-69082793(-) m6A CDS//intron       24981863//27773535//27371828
chr3:69082822-69082823(-) m6A CDS//intron       24981863//27773535//27371828
chr3:69082829-69082830(-) m6A CDS//intron       24981863//27773535//27371828
chr3:69082852-69082853(-) m6A CDS//intron       24981863//27773535
chr3:69084182-69084183(-) m6A CDS       24981863//27773535
chr3:69084230-69084231(-) m6A CDS       24981863//27773535
chr3:69084258-69084259(-) m6A CDS       24981863//27773535
chr3:69087728-69087729(-) m6A CDS       27773535
chr3:69087780-69087781(-) m6A CDS       27773535
chr3:69087867-69087868(-) m6A CDS       27773535
chr3:69088029-69088030(-) m6A CDS       27773535
chr3:69088043-69088044(-) m6A CDS       27773535
chr3:69088053-69088054(-) m6A CDS       27773535
chr3:69088106-69088107(-) m6A CDS       24981863//28052920//27773535//22608085
chr3:69088130-69088131(-) m6A CDS       24981863//28052920//27773535//22608085
chr3:69088704-69088705(-) m6A CDS       24981863//28052920//27773535//22575960//22608085
chr3:69088747-69088748(-) m6A CDS       24981863//28052920//27773535//22575960//22608085
chr3:69088780-69088781(-) m6A CDS       24981863//27773535//22575960//22608085
chr3:69088827-69088828(-) m6A CDS       24981863//27773535//22575960
chr3:69088836-69088837(-) m6A CDS       24981863//27773535//22575960
chr3:69092004-69092005(-) m6A CDS       24981863//27773535//22575960
chr3:69092011-69092012(-) m6A CDS       24981863//27773535//22575960
chr3:69092039-69092040(-) m6A CDS       24981863//27773535
chr3:69092052-69092053(-) m6A CDS       24981863//27773535
chr3:69093745-69093746(-) m6A CDS//exon       24284625//25456834//24981863//27773535//22608085
chr3:69096559-69096560(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr3:69096581-69096582(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr3:69096595-69096596(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr3:69096637-69096638(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//22608085
chr3:69096708-69096709(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr3:69096750-69096751(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr3:69096875-69096876(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr3:69096919-69096920(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr3:69096984-69096985(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr3:69097020-69097021(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr3:69097027-69097028(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr3:69097148-69097149(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr3:69097156-69097157(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr3:69097162-69097163(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr3:69097171-69097172(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr3:69097184-69097185(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr3:69097191-69097192(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr3:69097242-69097243(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr3:69097317-69097318(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr3:69097338-69097339(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr3:69097368-69097369(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr3:69097394-69097395(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr3:69097416-69097417(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr3:69097425-69097426(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr3:69097504-69097505(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr3:69097533-69097534(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr3:69097593-69097594(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr3:69097648-69097649(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr3:69097655-69097656(-) m6A CDS       24284625//24981863//27773535//27371828//27773536//22608085
chr3:69101343-69101344(-) m6A 5'UTR       24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-19b-2-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
TMF1
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-19b-2-5p
Interactor2: TMF1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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