Detail Information

Basic Information:


  VIRBase ID:  

HHID00063164

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-19b-1-5p:           CEMIP2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-19b-1-5p CEMIP2
miRBase
Accession/Entrez ID		 MIMAT0004491 23670
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - TMEM2

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-19b-1-5p
rs1330845252 chr13:91351221    G/A
rs771220050 chr13:91351229    C/T
rs1259633726 chr13:91351212    T/G
rs1279688822 chr13:91351213    G/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CEMIP2
chr9:74356307(-) A-I      intronic
chr9:74356651(-) A-I      intronic
chr9:74322937(-) A-I      intronic
chr9:74322935(-) A-I      intronic
chr9:74321830(-) A-I      intronic
chr9:74321779(-) A-I      intronic
chr9:74321069(-) A-I      intronic
chr9:74302730(-) A-I      intronic
chr9:74356843(-) A-I      intronic
chr9:74356326(-) A-I      intronic
chr9:74321063(-) A-I      intronic
chr9:74321062(-) A-I      intronic
chr9:74356290(-) A-I      intronic
chr9:74321123(-) A-I      intronic
chr9:74320981(-) A-I      intronic
chr9:74320979(-) A-I      intronic
chr9:74320901(-) A-I      intronic
chr9:74356291(-) A-I      intronic
chr9:74303411(-) A-I      intronic
chr9:74303416(-) A-I      intronic
chr9:74303433(-) A-I      intronic
chr9:74306123(-) A-I      intronic
chr9:74306127(-) A-I      intronic
chr9:74306132(-) A-I      intronic
chr9:74306137(-) A-I      intronic
chr9:74306163(-) A-I      intronic
chr9:74321855(-) A-I      intronic
chr9:74356289(-) A-I      intronic
chr9:74356254(-) A-I      intronic
chr9:74356251(-) A-I      intronic
chr9:74302865(-) A-I      intronic
chr9:74302870(-) A-I      intronic
chr9:74302878(-) A-I      intronic
chr9:74353307(-) A-I      intronic
chr9:74344528(-) A-I      intronic
chr9:74317111(-) A-I      intronic
chr9:74317079(-) A-I      intronic
chr9:74317074(-) A-I      intronic
chr9:74302884(-) A-I      intronic
chr9:74316289(-) A-I      intronic
chr9:74316286(-) A-I      intronic
chr9:74316259(-) A-I      intronic
chr9:74316199(-) A-I      intronic
chr9:74316189(-) A-I      intronic
chr9:74316160(-) A-I      intronic
chr9:74316159(-) A-I      intronic
chr9:74316154(-) A-I      intronic
chr9:74316133(-) A-I      intronic
chr9:74317066(-) A-I      intronic
chr9:74307742(-) A-I      intronic
chr9:74306290(-) A-I      intronic
chr9:74303583(-) A-I      intronic
chr9:74303550(-) A-I      intronic
chr9:74303005(-) A-I      intronic
chr9:74302864(-) A-I      intronic
chr9:74303401(-) A-I      intronic
chr9:74302699(-) A-I      intronic
chr9:74302523(-) A-I      intronic
chr9:74344478(-) A-I      intronic
chr9:74344051(-) A-I      intronic
chr9:74344045(-) A-I      intronic
chr9:74344023(-) A-I      intronic
chr9:74343077(-) A-I      intronic
chr9:74303397(-) A-I      intronic
chr9:74343031(-) A-I      intronic
chr9:74323055(-) A-I      intronic
chr9:74303410(-) A-I      intronic
chr9:74322981(-) A-I      intronic
chr9:74321919(-) A-I      intronic
chr9:74322979(-) A-I      intronic
chr9:74302526(-) A-I      intronic
chr9:74303599(-) A-I      intronic
chr9:74302880(-) A-I      intronic
chr9:74321914(-) A-I      intronic
chr9:74302897(-) A-I      intronic
chr9:74344508(-) A-I      intronic
chr9:74316198(-) A-I      intronic
chr9:74322913(-) A-I      intronic
chr9:74302553(-) A-I      intronic
chr9:74343286(-) A-I      intronic
chr9:74309115(-) A-I      intronic
chr9:74344029(-) A-I      intronic
chr9:74317140(-) A-I      intronic
chr9:74343815(-) A-I      intronic
chr9:74321915(-) A-I      intronic
chr9:74333668(-) A-I      intronic
chr9:74370628(-) A-I      intronic
chr9:74356821(-) A-I      intronic
chr9:74343037(-) A-I      intronic
chr9:74359073(-) A-I      intronic
chr9:74333666(-) A-I      intronic
chr9:74302706(-) A-I      intronic
chr9:74320960(-) A-I      intronic
chr9:74343850(-) A-I      intronic
chr9:74343392(-) A-I      intronic
chr9:74365900(-) A-I      intronic
chr9:74370262(-) A-I      intronic
chr9:74322857(-) A-I      intronic
chr9:74343786(-) A-I      intronic
chr9:74322017(-) A-I      intronic
chr9:74316294(-) A-I      intronic
chr9:74351919(-) A-I      intronic
chr9:74344037(-) A-I      intronic
chr9:74321836(-) A-I      intronic
chr9:74302500(-) A-I      intronic
chr9:74321023(-) A-I      intronic
chr9:74344472(-) A-I      intronic
chr9:74344279(-) A-I      intronic
chr9:74356286(-) A-I      intronic
chr9:74344346(-) A-I      intronic
chr9:74302889(-) A-I      intronic
chr9:74333631(-) A-I      intronic
chr9:74348943(-) A-I      intronic
chr9:74343840(-) A-I      intronic
chr9:74306114(-) A-I      intronic
chr9:74303443(-) A-I      intronic
chr9:74344354(-) A-I      intronic
chr9:74348942(-) A-I      intronic
chr9:74343949(-) A-I      intronic
chr9:74321873(-) A-I      intronic
chr9:74302527(-) A-I      intronic
chr9:74359088(-) A-I      intronic
chr9:74321841(-) A-I      intronic
chr9:74322921(-) A-I      intronic
chr9:74302991(-) A-I      intronic
chr9:74317143(-) A-I      intronic
chr9:74303064(-) A-I      intronic
chr9:74310369(-) A-I      intronic
chr9:74307707(-) A-I      intronic
chr9:74321882(-) A-I      intronic
chr9:74309318(-) A-I      intronic
chr9:74344028(-) A-I      intronic
chr9:74310328(-) A-I      intronic
chr9:74321840(-) A-I      intronic
chr9:74302470(-) A-I      intronic

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-19b-1-5p
Exosome Jurkat-derived T cell line (J77cl20)     21505438
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Mesenchymal stem cells     -
CEMIP2
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-19b-1-5p
Interactor2: CEMIP2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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