Detail Information

Basic Information:


  VIRBase ID:  

HHID00062778

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-16-1-3p:           SLC7A1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-16-1-3p SLC7A1
miRBase
Accession/Entrez ID		 MIMAT0004489 6541
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - ATRC1//CAT-1//ERR//HCAT1//REC1L

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-16-1-3p
rs377111580 chr13:50048986    C/T
rs769728617 chr13:50048992    CA/C
rs1460126106 chr13:50049003    C/A
rs1460126106 chr13:50049003    C/T
rs1468155921 chr13:50049001    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLC7A1
chr13:30165123(-) A-I      intronic
chr13:30162644(-) A-I      intronic
chr13:30150317(-) A-I      intronic
chr13:30164990(-) A-I      intronic
chr13:30150232(-) A-I      intronic
chr13:30150299(-) A-I      intronic
chr13:30162781(-) A-I      intronic
chr13:30134017(-) A-I      intronic
chr13:30162743(-) A-I      intronic
chr13:30150347(-) A-I      intronic
chr13:30150377(-) A-I      intronic
chr13:30162779(-) A-I      intronic
chr13:30150174(-) A-I      intronic
chr13:30148946(-) A-I      intronic
chr13:30150253(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SLC7A1
chr13:30162779(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLC7A1
chr13:30083687-30083688(-) m6A 3'UTR       27773535
chr13:30083728-30083729(-) m6A 3'UTR       27773535
chr13:30084103-30084104(-) m6A 3'UTR       25456834//24981863//22608085
chr13:30084118-30084119(-) m6A 3'UTR       25456834//24981863//22608085
chr13:30084167-30084168(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr13:30084276-30084277(-) m6A 3'UTR       24284625//24981863//22608085
chr13:30084361-30084362(-) m6A 3'UTR       24284625//27773535
chr13:30084559-30084560(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr13:30084714-30084715(-) m6A 3'UTR       24284625//24209618//24981863
chr13:30084771-30084772(-) m6A 3'UTR       24284625//24981863
chr13:30084868-30084869(-) m6A 3'UTR       24284625//27773535//22575960
chr13:30084883-30084884(-) m6A 3'UTR       24284625//27773535//22575960
chr13:30084929-30084930(-) m6A 3'UTR       24284625//24981863//27773535//22575960
chr13:30085005-30085006(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960//22608085
chr13:30085043-30085044(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960//22608085
chr13:30085069-30085070(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27773536//22575960//22608085
chr13:30085101-30085102(-) m6A 3'UTR       24284625//25456834//27773536//22575960//22608085
chr13:30085108-30085109(-) m6A 3'UTR       24284625//25456834//27773536//22575960//22608085
chr13:30085165-30085166(-) m6A 3'UTR       25456834//27773536//22575960
chr13:30085468-30085469(-) m6A 3'UTR       -
chr13:30085577-30085578(-) m6A 3'UTR       24209618
chr13:30085675-30085676(-) m6A 3'UTR       24284625
chr13:30085703-30085704(-) Cm 3'UTR       -
chr13:30085801-30085802(-) m6A 3'UTR       24284625//27773535
chr13:30085832-30085833(-) m6A 3'UTR       24284625//27773535
chr13:30085916-30085917(-) m6A 3'UTR       24284625//27773535
chr13:30085935-30085936(-) m6A 3'UTR       24284625//27773535
chr13:30086022-30086023(-) m6A 3'UTR       27773535
chr13:30086071-30086072(-) m6A 3'UTR       27773535
chr13:30086317-30086318(-) m6A 3'UTR       24284625//27773535//22575960
chr13:30086362-30086363(-) m6A 3'UTR       24284625//22575960
chr13:30086396-30086397(-) m6A 3'UTR       24284625//22575960
chr13:30087099-30087100(-) m6A 3'UTR       24981863
chr13:30087131-30087132(-) m6A 3'UTR       24284625//24981863
chr13:30087180-30087181(-) m6A 3'UTR       24284625//24981863
chr13:30087223-30087224(-) m6A 3'UTR       24284625//24981863
chr13:30087341-30087342(-) m6A 3'UTR       24284625//27773535
chr13:30087367-30087368(-) m6A 3'UTR       24284625//27773535
chr13:30087622-30087623(-) m6A 3'UTR       24284625//27773535//22575960
chr13:30087765-30087766(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr13:30087779-30087780(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr13:30087786-30087787(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr13:30087871-30087872(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr13:30087878-30087879(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr13:30088030-30088031(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr13:30088146-30088147(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr13:30088180-30088181(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr13:30088212-30088213(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr13:30088245-30088246(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr13:30088265-30088266(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr13:30088352-30088353(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr13:30088413-30088414(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr13:30088522-30088523(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr13:30088561-30088562(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr13:30088629-30088630(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr13:30088648-30088649(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr13:30090315-30090316(-) m6A CDS       24284625//27773535//22575960
chr13:30109978-30109979(-) m6A CDS       27773535
chr13:30110227-30110228(-) m6A CDS       24284625//25456834//24981863
chr13:30110266-30110267(-) m6A CDS       24284625//25456834
chr13:30110332-30110333(-) m6A 5'UTR       24284625
chr13:30127964-30127965(-) m6A 5'UTR       24284625
chr13:30127987-30127988(-) m6A 5'UTR       24284625
chr13:30169797-30169798(-) m6A 5'UTR       24981863
chr13:30169810-30169811(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-16-1-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
SLC7A1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-16-1-3p
Interactor2: SLC7A1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...