Detail Information

Basic Information:


  VIRBase ID:  

HHID00062685

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-let-7f-2-3p:           RNF38:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-let-7f-2-3p RNF38
miRBase
Accession/Entrez ID		 MIMAT0004487 152006
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-let-7f-2-3p
rs1556935827 chrX:53557203    C/G
rs1556935837 chrX:53557205    G/A
rs782106021 chrX:53557206    T/C
rs781874809 chrX:53557216    A/G
rs782760005 chrX:53557211    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RNF38
chr9:36365503(-) A-I      intronic
chr9:36369297(-) A-I      intronic
chr9:36362255(-) A-I      intronic
chr9:36378446(-) A-I      intronic
chr9:36372940(-) A-I      intronic
chr9:36369322(-) A-I      intronic
chr9:36369327(-) A-I      intronic
chr9:36369382(-) A-I      intronic
chr9:36369422(-) A-I      intronic
chr9:36369478(-) A-I      intronic
chr9:36372928(-) A-I      intronic
chr9:36378394(-) A-I      intronic
chr9:36378383(-) A-I      intronic
chr9:36371576(-) A-I      intronic
chr9:36370810(-) A-I      intronic
chr9:36346300(-) A-I      intronic
chr9:36362308(-) A-I      intronic
chr9:36346279(-) A-I      intronic
chr9:36346275(-) A-I      intronic
chr9:36369486(-) A-I      intronic
chr9:36350018(-) A-I      intronic
chr9:36347961(-) A-I      intronic
chr9:36394031(-) A-I      intronic
chr9:36394029(-) A-I      intronic
chr9:36383318(-) A-I      intronic
chr9:36350042(-) A-I      intronic
chr9:36378445(-) A-I      intronic
chr9:36346947(-) A-I      intronic
chr9:36346392(-) A-I      intronic
chr9:36346384(-) A-I      intronic
chr9:36369456(-) A-I      intronic
chr9:36361051(-) A-I      intronic
chr9:36361040(-) A-I      intronic
chr9:36361029(-) A-I      intronic
chr9:36346343(-) A-I      intronic
chr9:36341686(-) A-I      intronic
chr9:36362759(-) A-I      intronic
chr9:36361020(-) A-I      intronic
chr9:36349954(-) A-I      intronic
chr9:36365437(-) A-I      intronic
chr9:36346406(-) A-I      intronic
chr9:36346363(-) A-I      intronic
chr9:36362231(-) A-I      intronic
chr9:36362188(-) A-I      intronic
chr9:36362097(-) A-I      intronic
chr9:36361363(-) A-I      intronic
chr9:36362763(-) A-I      intronic
chr9:36361241(-) A-I      intronic
chr9:36358925(-) A-I      intronic
chr9:36365320(-) A-I      intronic
chr9:36365361(-) A-I      intronic
chr9:36362268(-) A-I      intronic
chr9:36365441(-) A-I      intronic
chr9:36349910(-) A-I      intronic
chr9:36339244(-) A-I      3'UTR
chr9:36367863(-) A-I      intronic
chr9:36346391(-) A-I      intronic
chr9:36397248(-) A-I      intronic
chr9:36347079(-) A-I      intronic
chr9:36350057(-) A-I      intronic
chr9:36362272(-) A-I      intronic
chr9:36370747(-) A-I      intronic
chr9:36371581(-) A-I      intronic
chr9:36346911(-) A-I      intronic
chr9:36370757(-) A-I      intronic
chr9:36365526(-) A-I      intronic
chr9:36349860(-) A-I      intronic
chr9:36348464(-) A-I      intronic
chr9:36359900(-) A-I      intronic
chr9:36365693(-) A-I      intronic
chr9:36365381(-) A-I      intronic
chr9:36362094(-) A-I      intronic
chr9:36358969(-) A-I      intronic
chr9:36365841(-) A-I      intronic
chr9:36350065(-) A-I      intronic
chr9:36362191(-) A-I      intronic
chr9:36363939(-) A-I      intronic
chr9:36341639(-) A-I      intronic
chr9:36397249(-) A-I      intronic
chr9:36346477(-) A-I      intronic
chr9:36363209(-) A-I      intronic
chr9:36370737(-) A-I      intronic
chr9:36350019(-) A-I      intronic
chr9:36346327(-) A-I      intronic
chr9:36370854(-) A-I      intronic
chr9:36340501(-) A-I      intronic
chr9:36361281(-) A-I      intronic
chr9:36371607(-) A-I      intronic
chr9:36346311(-) A-I      intronic
chr9:36346952(-) A-I      intronic
chr9:36346313(-) A-I      intronic
chr9:36374656(-) A-I      intronic
chr9:36346461(-) A-I      intronic
chr9:36346271(-) A-I      intronic
chr9:36350066(-) A-I      intronic
chr9:36349980(-) A-I      intronic
chr9:36361234(-) A-I      intronic
chr9:36362769(-) A-I      intronic
chr9:36373191(-) A-I      intronic
chr9:36346880(-) A-I      intronic
chr9:36350087(-) A-I      intronic
chr9:36365367(-) A-I      intronic
chr9:36348456(-) A-I      intronic
chr9:36361287(-) A-I      intronic
chr9:36345152(-) A-I      intronic
chr9:36370905(-) A-I      intronic
chr9:36362197(-) A-I      intronic
chr9:36346935(-) A-I      intronic
chr9:36365483(-) A-I      intronic
chr9:36365842(-) A-I      intronic
chr9:36346438(-) A-I      intronic
chr9:36346274(-) A-I      intronic
chr9:36370646(-) A-I      intronic
chr9:36346407(-) A-I      intronic
chr9:36349948(-) A-I      intronic
chr9:36350056(-) A-I      intronic
chr9:36358956(-) A-I      intronic
chr9:36365482(-) A-I      intronic
chr9:36347054(-) A-I      intronic
chr9:36347017(-) A-I      intronic
chr9:36365384(-) A-I      intronic
chr9:36374647(-) A-I      intronic
chr9:36346299(-) A-I      intronic
chr9:36347964(-) A-I      intronic
chr9:36349953(-) A-I      intronic
chr9:36378338(-) A-I      intronic
chr9:36371608(-) A-I      intronic
chr9:36374669(-) A-I      intronic
chr9:36362771(-) A-I      intronic
chr9:36365565(-) A-I      intronic
chr9:36349944(-) A-I      intronic
chr9:36373121(-) A-I      intronic
chr9:36370652(-) A-I      intronic
chr9:36347009(-) A-I      intronic
chr9:36361432(-) A-I      intronic
chr9:36365307(-) A-I      intronic
chr9:36365496(-) A-I      intronic
chr9:36371590(-) A-I      intronic
chr9:36370846(-) A-I      intronic
chr9:36346439(-) A-I      intronic
chr9:36380500(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RNF38
chr9:36346949(-) A-I intron -    22327324
chr9:36346274(-) A-G intron -    22484847
chr9:36346299(-) A-G intron -    22484847
chr9:36346313(-) A-G intron -    22484847
chr9:36346407(-) A-G intron -    22484847
chr9:36346438(-) A-G intron -    22484847
chr9:36346439(-) A-G intron -    22484847
chr9:36346477(-) A-G intron -    22484847
chr9:36346880(-) A-G intron -    22484847
chr9:36346912(-) A-G intron -    22484847
chr9:36346949(-) A-G intron -    22484847
chr9:36347884(-) A-G intron -    22484847
chr9:36349860(-) A-G intron -    22484847
chr9:36350019(-) A-G intron -    22484847
chr9:36350057(-) A-G intron -    22484847
chr9:36350087(-) A-G intron -    22484847
chr9:36365565(-) A-G intron -    22484847
chr9:36365681(-) C-A intron -    22484847
chr9:36371581(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RNF38
chr9:36339631-36339632(-) m6A 3'UTR       24981863
chr9:36339680-36339681(-) m6A 3'UTR       24981863
chr9:36339692-36339693(-) m6A 3'UTR       24981863
chr9:36353286-36353287(-) m6A CDS       27773535
chr9:36353298-36353299(-) m6A CDS       27773535
chr9:36356316-36356317(-) m6A CDS       27773535
chr9:36357804-36357805(-) m6A CDS//exon       27773535
chr9:36357926-36357927(-) m6A CDS//exon       27773535
chr9:36369857-36369858(-) m6A CDS//exon       27773535//27371828
chr9:36372552-36372553(-) m6A CDS//intron       27371828
chr9:36376097-36376098(-) m6A 5'UTR//CDS//exon       24981863//27773535
chr9:36390506-36390507(-) m6A 5'UTR//CDS//exon//intron       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-let-7f-2-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
RNF38
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-let-7f-2-3p
Interactor2: RNF38

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...