Detail Information

Basic Information:


  VIRBase ID:  

HHID00062647

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-let-7f-2-3p:           OSGEPL1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-let-7f-2-3p OSGEPL1
miRBase
Accession/Entrez ID		 MIMAT0004487 64172
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - OSGEPL//Qri7

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-let-7f-2-3p
rs1556935827 chrX:53557203    C/G
rs1556935837 chrX:53557205    G/A
rs782106021 chrX:53557206    T/C
rs781874809 chrX:53557216    A/G
rs782760005 chrX:53557211    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR OSGEPL1
chr2:190613933(-) A-I      intronic
chr2:190614701(-) A-I      intronic
chr2:190612560(-) A-I      intronic
chr2:190623081(-) A-I      intronic
chr2:190616832(-) A-I      intronic
chr2:190616824(-) A-I      intronic
chr2:190612591(-) A-I      intronic
chr2:190612576(-) A-I      intronic
chr2:190612527(-) A-I      intronic
chr2:190613021(-) A-I      intronic
chr2:190612701(-) A-I      intronic
chr2:190613058(-) A-I      intronic
chr2:190613187(-) A-I      intronic
chr2:190612662(-) A-I      intronic
chr2:190612613(-) A-I      intronic
chr2:190611979(-) A-I      3'UTR
chr2:190611849(-) A-I      3'UTR
chr2:190612679(-) A-I      intronic
chr2:190616309(-) A-I      intronic
chr2:190613149(-) A-I      intronic
chr2:190614717(-) A-I      intronic
chr2:190613216(-) A-I      intronic
chr2:190612487(-) A-I      intronic
chr2:190612658(-) A-I      intronic
chr2:190612707(-) A-I      intronic
chr2:190613196(-) A-I      intronic
chr2:190612986(-) A-I      intronic
chr2:190612582(-) A-I      intronic
chr2:190612585(-) A-I      intronic
chr2:190616626(-) A-I      intronic
chr2:190616770(-) A-I      intronic
chr2:190612975(-) A-I      intronic
chr2:190612997(-) A-I      intronic
chr2:190613808(-) A-I      intronic
chr2:190612535(-) A-I      intronic
chr2:190616758(-) A-I      intronic
chr2:190616427(-) A-I      intronic
chr2:190613890(-) A-I      intronic
chr2:190616788(-) A-I      intronic
chr2:190613716(-) A-I      intronic
chr2:190611844(-) A-I      3'UTR
chr2:190611953(-) A-I      3'UTR
chr2:190611840(-) A-I      3'UTR
chr2:190612029(-) A-I      3'UTR
chr2:190611805(-) A-I      3'UTR
chr2:190611955(-) A-I      3'UTR
chr2:190611982(-) A-I      3'UTR
chr2:190612024(-) A-I      3'UTR
chr2:190611943(-) A-I      3'UTR
chr2:190616787(-) A-I      intronic
chr2:190612517(-) A-I      intronic
chr2:190612676(-) A-I      intronic
chr2:190614727(-) A-I      intronic
chr2:190612615(-) A-I      intronic
chr2:190612544(-) A-I      intronic
chr2:190613805(-) A-I      intronic
chr2:190614085(-) A-I      intronic
chr2:190614796(-) A-I      intronic
chr2:190624249(-) A-I      intronic
chr2:190612631(-) A-I      intronic
chr2:190614844(-) A-I      intronic
chr2:190614737(-) A-I      intronic
chr2:190624248(-) A-I      intronic
chr2:190614831(-) A-I      intronic
chr2:190612486(-) A-I      intronic
chr2:190612630(-) A-I      intronic
chr2:190613007(-) A-I      intronic
chr2:190613889(-) A-I      intronic
chr2:190613062(-) A-I      intronic
chr2:190612549(-) A-I      intronic
chr2:190612536(-) A-I      intronic
chr2:190613153(-) A-I      intronic
chr2:190613054(-) A-I      intronic
chr2:190625351(-) A-I      intronic
chr2:190616777(-) A-I      intronic
chr2:190612523(-) A-I      intronic
chr2:190616413(-) A-I      intronic
chr2:190616627(-) A-I      intronic
chr2:190616807(-) A-I      intronic
chr2:190614766(-) A-I      intronic
chr2:190616726(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED OSGEPL1
chr2:190611414(-) A-I exon 3'UTR    15342557
chr2:190612517(-) A-I intron -    15342557
chr2:190612523(-) A-I intron -    15342557
chr2:190612535(-) A-I intron -    15342557
chr2:190612536(-) A-I intron -    15342557
chr2:190612549(-) A-I intron -    15342557
chr2:190612582(-) A-I intron -    15258596
chr2:190612583(-) A-I intron -    15342557   //15258596
chr2:190612585(-) A-I intron -    15342557   //15258596
chr2:190613173(-) A-I intron -    22327324
chr2:190613177(-) A-I intron -    22327324
chr2:190616693(-) A-I intron -    22327324
chr2:190611844(-) A-G exon 3'UTR    21725310
chr2:190611967(-) T-C intron -    22484847
chr2:190611982(-) A-G intron -    22484847
chr2:190612024(-) A-G intron -    22484847
chr2:190612029(-) A-G intron -    22484847
chr2:190612064(-) G-T intron -    22484847
chr2:190612529(-) T-C intron -    22484847
chr2:190612535(-) A-G intron -    22484847
chr2:190612615(-) A-G intron -    22484847
chr2:190612631(-) A-G intron -    22484847
chr2:190612646(-) T-C intron -    22484847
chr2:190612986(-) A-G intron -    22484847
chr2:190613007(-) A-G intron -    22484847
chr2:190613068(-) A-G intron -    22484847
chr2:190613173(-) A-G intron -    22484847
chr2:190613177(-) A-G intron -    22484847
chr2:190613216(-) A-G intron -    22484847
chr2:190614598(-) T-C intron -    22484847
chr2:190614646(-) T-C intron -    22484847
chr2:190614727(-) A-G intron -    22484847
chr2:190614752(-) T-C intron -    22484847
chr2:190614766(-) A-G intron -    22484847
chr2:190616226(-) T-C intron -    22484847
chr2:190616244(-) A-G intron -    22484847
chr2:190616270(-) T-C intron -    22484847
chr2:190616368(-) T-C intron -    22484847
chr2:190616405(-) T-C intron -    22484847
chr2:190616413(-) A-G intron -    22484847
chr2:190616423(-) T-C intron -    22484847
chr2:190616693(-) T-C intron -    22484847
chr2:190616749(-) T-C intron -    22484847
chr2:190616763(-) T-C intron -    22484847
chr2:190616787(-) A-G intron -    22484847
chr2:190616788(-) A-G intron -    22484847
chr2:190616802(-) T-C intron -    22484847
chr2:190616839(-) A-G intron -    22484847
chr2:190622921(-) T-C intron -    22484847
chr2:190624055(-) T-C intron -    22484847
chr2:190624114(-) T-C intron -    22484847
chr2:190624116(-) T-C intron -    22484847
chr2:190624198(-) T-C intron -    22484847
chr2:190624249(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase OSGEPL1
chr2:190611462-190611463(-) m6A 3'UTR       27773535
chr2:190611500-190611501(-) m6A 3'UTR       27773535
chr2:190618753-190618754(-) m6A CDS//exon       27773535
chr2:190618840-190618841(-) m6A exon//intron       27773535
chr2:190618960-190618961(-) m6A CDS//exon       24981863
chr2:190618990-190618991(-) m6A CDS//exon       24981863
chr2:190619002-190619003(-) m6A CDS//exon       24981863
chr2:190619044-190619045(-) m6A CDS//exon       24981863
chr2:190619059-190619060(-) m6A CDS//exon       24981863
chr2:190619550-190619551(-) m6A exon//intron       27773535
chr2:190619605-190619606(-) m6A exon//intron       27773535
chr2:190620099-190620100(-) m6A 5'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:190620150-190620151(-) m6A 5'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:190620156-190620157(-) m6A 5'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:190626161-190626162(-) m6A 5'UTR//CDS//exon       24284625//27773535//22608085
chr2:190626197-190626198(-) m6A 5'UTR//CDS//exon       27773535
chr2:190626236-190626237(-) m6A 5'UTR//CDS//exon       27773535
chr2:190626272-190626273(-) m6A CDS//exon//intron       27773535
chr2:190626327-190626328(-) m6A CDS//exon//intron       27773535
chr2:190626347-190626348(-) m6A CDS//exon//intron       27773535
chr2:190627311-190627312(-) m6A 5'UTR//intron       24981863
chr2:190627441-190627442(-) m6A 5'UTR//exon       24981863
chr2:190627538-190627539(-) m6A 5'UTR       24981863
chr2:190627560-190627561(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-let-7f-2-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
OSGEPL1
Cytosol HCC cell line (HepG2)     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-let-7f-2-3p
Interactor2: OSGEPL1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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