Basic Information:

  VIRBase ID:  

HHID00062644

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-let-7f-2-3p:  MIMAT0004487          ABHD17C:  NM_021214     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-let-7f-2-3p	ABHD17C
miRBase Accession/Entrez ID	MIMAT0004487	58489
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	FAM108C1

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-let-7f-2-3p	rs1556935827 chrX:53557203    C/G rs1556935837 chrX:53557205    G/A rs782106021 chrX:53557206    T/C rs781874809 chrX:53557216    A/G rs782760005 chrX:53557211    T/C

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ABHD17C	chr15:81036118(+) A-I      intronic chr15:81045952(+) A-I      intronic chr15:81045944(+) A-I      intronic chr15:81022270(+) A-I      intronic chr15:81022269(+) A-I      intronic chr15:81022206(+) A-I      intronic chr15:81012355(+) A-I      intronic chr15:81012197(+) A-I      intronic chr15:81012159(+) A-I      intronic chr15:81006030(+) A-I      intronic chr15:81016368(+) A-I      intronic chr15:81016348(+) A-I      intronic chr15:81016334(+) A-I      intronic chr15:81012175(+) A-I      intronic chr15:81006003(+) A-I      intronic chr15:81006029(+) A-I      intronic chr15:81000682(+) A-I      intronic chr15:81044044(+) A-I      intronic chr15:81043457(+) A-I      intronic chr15:81016397(+) A-I      intronic chr15:81016393(+) A-I      intronic chr15:81043968(+) A-I      intronic chr15:81045908(+) A-I      intronic chr15:81022214(+) A-I      intronic chr15:81006559(+) A-I      intronic chr15:81022198(+) A-I      intronic chr15:80990612(+) A-I      intronic chr15:81006565(+) A-I      intronic chr15:81016423(+) A-I      intronic chr15:81003180(+) A-I      intronic chr15:81005967(+) A-I      intronic chr15:81046037(+) A-I      intronic chr15:81045906(+) A-I      intronic chr15:81016424(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ABHD17C	chr15:80988097-80988098(+) Y CDS//intron       26075521 chr15:81046671-81046672(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr15:81046677-81046678(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr15:81046695-81046696(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr15:81046713-81046714(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr15:81046745-81046746(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr15:81046907-81046908(+) m6A 3'UTR//exon       24284625//24981863//22575960//22608085 chr15:81046912-81046913(+) m6A 3'UTR//exon       24284625//24981863//22575960//22608085 chr15:81046972-81046973(+) m6A 3'UTR//exon       24284625//24981863//26404942//22575960//22608085 chr15:81047049-81047050(+) m6A 3'UTR//exon       24284625//24981863//22575960//22608085 chr15:81047214-81047215(+) m6A 3'UTR//exon       24284625//24981863//26404942//22608085 chr15:81047222-81047223(+) m6A 3'UTR//exon       24284625//24981863//26404942//22608085 chr15:81047243-81047244(+) m6A 3'UTR//exon       24284625//24981863//26404942//22608085 chr15:81047301-81047302(+) m6A 3'UTR//exon       24284625//24981863//26404942//22608085 chr15:81047311-81047312(+) m6A 3'UTR//exon       24284625//24981863//26404942//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-let-7f-2-3p	Exosome Plasma     23663360 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
	ABHD17C	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-let-7f-2-3p
Interactor2: ABHD17C

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.