Detail Information

Basic Information:


  VIRBase ID:  

HHID00062494

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-let-7f-2-3p:           EPHA4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-let-7f-2-3p EPHA4
miRBase
Accession/Entrez ID		 MIMAT0004487 2043
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - EK8//HEK8//SEK//TYRO1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-let-7f-2-3p
rs1556935827 chrX:53557203    C/G
rs1556935837 chrX:53557205    G/A
rs782106021 chrX:53557206    T/C
rs781874809 chrX:53557216    A/G
rs782760005 chrX:53557211    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR EPHA4
chr2:222356672(-) A-I      intronic
chr2:222356666(-) A-I      intronic
chr2:222309682(-) A-I      intronic
chr2:222356688(-) A-I      intronic
chr2:222356709(-) A-I      intronic
chr2:222309660(-) A-I      intronic
chr2:222386614(-) A-I      intronic
chr2:222309673(-) A-I      intronic
chr2:222346798(-) A-I      intronic
chr2:222346840(-) A-I      intronic
chr2:222348333(-) A-I      intronic
chr2:222364583(-) A-I      intronic
chr2:222364659(-) A-I      intronic
chr2:222364670(-) A-I      intronic
chr2:222380480(-) A-I      intronic
chr2:222380504(-) A-I      intronic
chr2:222303442(-) A-I      intronic
chr2:222364758(-) A-I      intronic
chr2:222364678(-) A-I      intronic
chr2:222388460(-) A-I      intronic
chr2:222348332(-) A-I      intronic
chr2:222409319(-) A-I      intronic
chr2:222410187(-) A-I      intronic
chr2:222421267(-) A-I      intronic
chr2:222402491(-) A-I      intronic
chr2:222309491(-) A-I      intronic
chr2:222309549(-) A-I      intronic
chr2:222309570(-) A-I      intronic
chr2:222306620(-) A-I      intronic
chr2:222340828(-) A-I      intronic
chr2:222309750(-) A-I      intronic
chr2:222388451(-) A-I      intronic
chr2:222359325(-) A-I      intronic
chr2:222362202(-) A-I      intronic
chr2:222318899(-) A-I      intronic
chr2:222373882(-) A-I      intronic
chr2:222405866(-) A-I      intronic
chr2:222302560(-) A-I      intronic
chr2:222364538(-) A-I      intronic
chr2:222387665(-) A-I      intronic
chr2:222310247(-) A-I      intronic
chr2:222373881(-) A-I      intronic
chr2:222309589(-) A-I      intronic
chr2:222348439(-) A-I      intronic
chr2:222362293(-) A-I      intronic
chr2:222386549(-) A-I      intronic
chr2:222309742(-) A-I      intronic
chr2:222303422(-) A-I      intronic
chr2:222310151(-) A-I      intronic
chr2:222303380(-) A-I      intronic
chr2:222421052(-) A-I      intronic
chr2:222373883(-) A-I      intronic
chr2:222409954(-) A-I      intronic
chr2:222309674(-) A-I      intronic
chr2:222364615(-) A-I      intronic
chr2:222346763(-) A-I      intronic
chr2:222310210(-) A-I      intronic
chr2:222364618(-) A-I      intronic
chr2:222304332(-) A-I      intronic
chr2:222304300(-) A-I      intronic
chr2:222315930(-) A-I      intronic
chr2:222309729(-) A-I      intronic
chr2:222363710(-) A-I      intronic
chr2:222304153(-) A-I      intronic
chr2:222304133(-) A-I      intronic
chr2:222309616(-) A-I      intronic
chr2:222421088(-) A-I      intronic
chr2:222309615(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase EPHA4
chr2:222284216-222284217(-) m6A 3'UTR//exon       24981863//22608085
chr2:222284321-222284322(-) m6A 3'UTR//exon       24981863//22608085
chr2:222284414-222284415(-) m6A 3'UTR//exon       24981863//22608085
chr2:222284517-222284518(-) m6A 3'UTR//exon       22608085
chr2:222284534-222284535(-) m6A 3'UTR//exon       22608085
chr2:222284542-222284543(-) m6A 3'UTR//exon       22608085
chr2:222284559-222284560(-) m6A 3'UTR//exon       22608085
chr2:222284628-222284629(-) m6A 3'UTR//exon       22608085
chr2:222284739-222284740(-) m6A 3'UTR//exon       22608085
chr2:222284838-222284839(-) m6A 3'UTR//exon       24981863//22608085
chr2:222284865-222284866(-) m6A 3'UTR//exon       24981863//22608085
chr2:222284969-222284970(-) m6A 3'UTR//exon       24981863//22608085
chr2:222285054-222285055(-) m6A 3'UTR//exon       24981863//22608085
chr2:222285061-222285062(-) m6A 3'UTR//exon       24981863//22608085
chr2:222285124-222285125(-) m6A 3'UTR//exon       24981863//22608085
chr2:222285135-222285136(-) m6A 3'UTR//exon       24981863//22608085
chr2:222285202-222285203(-) m6A 3'UTR//exon       24981863//22608085
chr2:222285207-222285208(-) m6A 3'UTR//exon       24981863//22608085
chr2:222286754-222286755(-) m6A exon//intron       22608085
chr2:222290025-222290026(-) m6A 3'UTR//exon       24981863//22608085
chr2:222290034-222290035(-) m6A 3'UTR//exon       24981863//22608085
chr2:222290092-222290093(-) m6A 3'UTR//exon       24981863//22608085
chr2:222290293-222290294(-) m6A 3'UTR//exon       25456834//24981863//22608085
chr2:222290306-222290307(-) m6A 3'UTR       25456834//24981863//22608085
chr2:222290319-222290320(-) m6A 3'UTR       25456834//24981863//22608085
chr2:222290410-222290411(-) m6A 3'UTR       24209618//24981863//22608085
chr2:222290426-222290427(-) m6A 3'UTR       24209618//24981863//22608085
chr2:222290464-222290465(-) m6A 3'UTR       24209618//24981863//22608085
chr2:222290535-222290536(-) m6A 3'UTR       24209618//24981863//22608085
chr2:222290542-222290543(-) m6A 3'UTR       24209618//24981863//22608085
chr2:222290584-222290585(-) m6A 3'UTR       24981863//22608085
chr2:222290623-222290624(-) m6A 3'UTR       24981863//22608085
chr2:222290680-222290681(-) m6A 3'UTR       24209618//24981863//22608085
chr2:222290724-222290725(-) m6A 3'UTR       24981863//22608085
chr2:222290731-222290732(-) m6A 3'UTR       24981863//22608085
chr2:222290788-222290789(-) m6A 3'UTR//CDS       24981863//22608085
chr2:222347109-222347110(-) m6A CDS       24981863
chr2:222347206-222347207(-) m6A CDS//exon       24981863
chr2:222428773-222428774(-) m6A 3'UTR//CDS//intron       24981863//22608085
chr2:222428800-222428801(-) m6A 3'UTR//CDS//intron       24981863//22608085
chr2:222428854-222428855(-) m6A 3'UTR//CDS//intron       24981863//22575960//22608085
chr2:222428884-222428885(-) m6A 3'UTR//CDS//intron       25456834//24981863//22575960//22608085
chr2:222428924-222428925(-) m6A 3'UTR//CDS//intron       25456834//24981863//22608085
chr2:222428953-222428954(-) m6A 3'UTR//CDS//intron       25456834//24981863//22608085
chr2:222429017-222429018(-) m6A 3'UTR//CDS//intron       25456834//24981863//22608085
chr2:222429042-222429043(-) m6A 3'UTR//CDS//intron       24981863//22608085
chr2:222429068-222429069(-) m6A 3'UTR//CDS//intron       24981863//22608085
chr2:222433470-222433471(-) m6A 5'UTR//CDS//intron       22608085
chr2:222436970-222436971(-) m6A 5'UTR       24981863
chr2:222438597-222438598(-) m6A 5'UTR//intron       -
chr2:222438605-222438606(-) m6A 5'UTR//intron       -
chr2:222438770-222438771(-) m6A 5'UTR       -
chr2:222438789-222438790(-) m6A 5'UTR       24981863
chr2:222438821-222438822(-) m6A 5'UTR       24981863
chr2:222438851-222438852(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-let-7f-2-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
EPHA4
Exosome Blood     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hsa-let-7f-2-3p
Interactor2: EPHA4

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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