Detail Information

Basic Information:


  VIRBase ID:  

HHID00062433

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-let-7f-1-3p:           SLC10A7:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-let-7f-1-3p SLC10A7
miRBase
Accession/Entrez ID		 MIMAT0004486 84068
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - C4orf13//P7//SSASKS

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-let-7f-1-3p
rs1242905594 chr9:94176409    C/T
rs1440850304 chr9:94176429    C/T
rs375140031 chr9:94176420    A/G
rs778240668 chr9:94176418    C/A
rs753257172 chr9:94176416    A/C
rs753257172 chr9:94176416    A/G
rs780673185 chr9:94176411    A/C
rs780673185 chr9:94176411    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLC10A7
chr4:147328007(-) A-I      intronic
chr4:147328023(-) A-I      intronic
chr4:147328026(-) A-I      intronic
chr4:147332233(-) A-I      intronic
chr4:147332205(-) A-I      intronic
chr4:147332201(-) A-I      intronic
chr4:147384841(-) A-I      intronic
chr4:147413113(-) A-I      intronic
chr4:147413248(-) A-I      intronic
chr4:147413263(-) A-I      intronic
chr4:147332191(-) A-I      intronic
chr4:147413366(-) A-I      intronic
chr4:147329488(-) A-I      intronic
chr4:147328035(-) A-I      intronic
chr4:147413700(-) A-I      intronic
chr4:147413772(-) A-I      intronic
chr4:147428630(-) A-I      intronic
chr4:147328027(-) A-I      intronic
chr4:147328057(-) A-I      intronic
chr4:147349205(-) A-I      intronic
chr4:147348363(-) A-I      intronic
chr4:147349217(-) A-I      intronic
chr4:147349221(-) A-I      intronic
chr4:147349229(-) A-I      intronic
chr4:147384855(-) A-I      intronic
chr4:147325894(-) A-I      intronic
chr4:147349207(-) A-I      intronic
chr4:147211309(-) A-I      intronic
chr4:147211312(-) A-I      intronic
chr4:147328013(-) A-I      intronic
chr4:147328003(-) A-I      intronic
chr4:147211318(-) A-I      intronic
chr4:147211328(-) A-I      intronic
chr4:147325821(-) A-I      intronic
chr4:147325841(-) A-I      intronic
chr4:147332277(-) A-I      intronic
chr4:147341955(-) A-I      intronic
chr4:147341994(-) A-I      intronic
chr4:147345256(-) A-I      intronic
chr4:147345400(-) A-I      intronic
chr4:147345403(-) A-I      intronic
chr4:147345405(-) A-I      intronic
chr4:147345569(-) A-I      intronic
chr4:147345645(-) A-I      intronic
chr4:147345688(-) A-I      intronic
chr4:147348294(-) A-I      intronic
chr4:147348310(-) A-I      intronic
chr4:147348318(-) A-I      intronic
chr4:147353935(-) A-I      intronic
chr4:147354113(-) A-I      intronic
chr4:147354127(-) A-I      intronic
chr4:147354143(-) A-I      intronic
chr4:147354168(-) A-I      intronic
chr4:147354998(-) A-I      intronic
chr4:147355853(-) A-I      intronic
chr4:147355929(-) A-I      intronic
chr4:147355932(-) A-I      intronic
chr4:147367526(-) A-I      intronic
chr4:147384765(-) A-I      intronic
chr4:147384810(-) A-I      intronic
chr4:147384811(-) A-I      intronic
chr4:147384846(-) A-I      intronic
chr4:147340876(-) A-I      intronic
chr4:147316318(-) A-I      intronic
chr4:147385252(-) A-I      intronic
chr4:147413135(-) A-I      intronic
chr4:147211809(-) A-I      intronic
chr4:147413696(-) A-I      intronic
chr4:147345668(-) A-I      intronic
chr4:147328052(-) A-I      intronic
chr4:147325873(-) A-I      intronic
chr4:147345663(-) A-I      intronic
chr4:147413536(-) A-I      intronic
chr4:147413634(-) A-I      intronic
chr4:147345630(-) A-I      intronic
chr4:147211139(-) A-I      intronic
chr4:147413698(-) A-I      intronic
chr4:147345477(-) A-I      intronic
chr4:147354103(-) A-I      intronic
chr4:147388988(-) A-I      intronic
chr4:147384851(-) A-I      intronic
chr4:147388823(-) A-I      intronic
chr4:147345749(-) A-I      intronic
chr4:147325872(-) A-I      intronic
chr4:147355986(-) A-I      intronic
chr4:147388853(-) A-I      intronic
chr4:147345771(-) A-I      intronic
chr4:147385204(-) A-I      intronic
chr4:147345476(-) A-I      intronic
chr4:147354465(-) A-I      intronic
chr4:147413588(-) A-I      intronic
chr4:147384781(-) A-I      intronic
chr4:147355987(-) A-I      intronic
chr4:147413740(-) A-I      intronic
chr4:147315786(-) A-I      intronic
chr4:147211072(-) A-I      intronic
chr4:147345258(-) A-I      intronic
chr4:147345568(-) A-I      intronic
chr4:147413272(-) A-I      intronic
chr4:147211232(-) A-I      intronic
chr4:147332146(-) A-I      intronic
chr4:147431592(-) A-I      intronic
chr4:147384892(-) A-I      intronic
chr4:147354078(-) A-I      intronic
chr4:147345342(-) A-I      intronic
chr4:147345449(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SLC10A7
chr4:147423640(-) A-G intron -    22484847
chr4:147195448(-) G-A intron -    22484847
chr4:147211809(-) A-G intron -    22484847
chr4:147211927(-) T-C intron -    22484847
chr4:147294377(-) A-G intron -    22484847
chr4:147315786(-) A-G intron -    22484847
chr4:147316318(-) A-G intron -    22484847
chr4:147325872(-) A-G intron -    22484847
chr4:147325873(-) A-G intron -    22484847
chr4:147328052(-) A-G intron -    22484847
chr4:147345258(-) A-G intron -    22484847
chr4:147345342(-) A-G intron -    22484847
chr4:147345449(-) A-G intron -    22484847
chr4:147345630(-) A-G intron -    22484847
chr4:147345690(-) A-G intron -    22484847
chr4:147345771(-) A-G intron -    22484847
chr4:147354078(-) A-G intron -    22484847
chr4:147354103(-) A-G intron -    22484847
chr4:147384721(-) A-G intron -    22484847
chr4:147384781(-) A-G intron -    22484847
chr4:147384784(-) A-G intron -    22484847
chr4:147384846(-) A-G intron -    22484847
chr4:147384851(-) A-G intron -    22484847
chr4:147384857(-) A-G intron -    22484847
chr4:147384892(-) A-G intron -    22484847
chr4:147413135(-) A-G intron -    22484847
chr4:147413272(-) A-G intron -    22484847
chr4:147413751(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLC10A7
chr4:147175982-147175983(-) m6A 3'UTR       27773535
chr4:147176278-147176279(-) m6A 3'UTR       27773535
chr4:147176346-147176347(-) m6A 3'UTR       27773535
chr4:147176355-147176356(-) m6A 3'UTR       27773535
chr4:147176385-147176386(-) m6A 3'UTR       27773535
chr4:147176396-147176397(-) m6A 3'UTR       27773535
chr4:147176493-147176494(-) m6A 3'UTR       27773535
chr4:147176502-147176503(-) m6A 3'UTR       27773535
chr4:147176545-147176546(-) m6A 3'UTR       27773535
chr4:147176771-147176772(-) m6A 3'UTR       27773535
chr4:147438194-147438195(-) m6A CDS//exon       27773535
chr4:147438207-147438208(-) m6A CDS//exon       27773535
chr4:147442797-147442798(-) m6A CDS//exon       27773535
chr4:147442840-147442841(-) m6A CDS//exon       27773535//22608085
chr4:147442888-147442889(-) m6A 5'UTR//exon       24981863//27773535//27371828//22608085
chr4:147442893-147442894(-) m6A 5'UTR//exon       24981863//27773535//27371828//22608085
chr4:147442901-147442902(-) m6A 5'UTR//exon       24981863//27773535//27371828//22608085
chr4:147442966-147442967(-) m6A 5'UTR//exon       24284625//24981863//27773535//27371828//22608085
chr4:147443081-147443082(-) m6A 5'UTR       22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-let-7f-1-3p
Exosome Plasma     23663360
Exosome Plasma     24683445
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Extracellular vesicle Colon cancer cell line (LIM1863)     25330373
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells|Urine     -
SLC10A7
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-let-7f-1-3p
Interactor2: SLC10A7

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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