Detail Information

Basic Information:


  VIRBase ID:  

HHID00062198

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-let-7a-3p:           LIMD2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-let-7a-3p LIMD2
miRBase
Accession/Entrez ID		 MIMAT0004481 80774
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-let-7a-3p
rs1219969167 chr9:94176028    T/G
rs1399588338 chr9:94176027    G/A
rs1453867589 chr9:94176023    T/A
rs770208205 chr9:94176022    C/T
rs1265084977 chr22:46112817    T/C
rs372596018 chr22:46112808    T/C
rs1198423693 chr9:94176020    A/G
rs748585376 chr9:94176015    A/G
rs781681931 chr9:94176014    T/G
rs972845958 chr9:94176013    CTA/C
rs779353569 chr22:46112805    C/T
rs970921980 chr22:46112807    A/G

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LIMD2
chr17:61773277-61773278(-) m6A 3'UTR       27371828
chr17:61773338-61773339(-) m6A 3'UTR       25456834//27371828
chr17:61773351-61773352(-) m6A 3'UTR       25456834//27371828
chr17:61773421-61773422(-) m6A 3'UTR       24284625//25456834//27371828
chr17:61773466-61773467(-) m6A 3'UTR       24284625//25456834//27371828
chr17:61773514-61773515(-) m6A 3'UTR       24209618//25456834//27773535//27371828
chr17:61773520-61773521(-) m6A 3'UTR       24209618//25456834//27773535//27371828
chr17:61773674-61773675(-) m6A 3'UTR       27773535//27371828
chr17:61773714-61773715(-) m6A 3'UTR       24209618//25456834//24981863//27773535//27371828
chr17:61773800-61773801(-) m6A 3'UTR       24209618//25456834//27773535//27371828
chr17:61773832-61773833(-) m6A 3'UTR       24209618//25456834//27773535//27371828
chr17:61773842-61773843(-) m6A 3'UTR       24209618//25456834//27773535//27371828
chr17:61773889-61773890(-) m6A 3'UTR       24209618//25456834//24981863//27371828
chr17:61773958-61773959(-) m6A 3'UTR       25456834//27371828
chr17:61773988-61773989(-) m6A 3'UTR       25456834//27371828
chr17:61774016-61774017(-) m6A 3'UTR       25456834//27371828
chr17:61774045-61774046(-) m6A 3'UTR       25456834//27371828
chr17:61774312-61774313(-) m6A 3'UTR       25456834//27371828
chr17:61774379-61774380(-) m6A 3'UTR       25456834//24981863//27371828
chr17:61774385-61774386(-) m6A 3'UTR       25456834//24981863//27371828
chr17:61774402-61774403(-) m6A 3'UTR       25456834//24981863//27371828
chr17:61774458-61774459(-) m6A 3'UTR       25456834//24981863//27371828//27773536
chr17:61774479-61774480(-) m6A 3'UTR       25456834//24981863//27371828//27773536
chr17:61774497-61774498(-) m6A 3'UTR       25456834//24981863//27371828
chr17:61774527-61774528(-) m6A 3'UTR       25456834//24981863//27371828
chr17:61774535-61774536(-) m6A 3'UTR       25456834//24981863//27371828
chr17:61774556-61774557(-) m6A 3'UTR       25456834//24981863//27371828
chr17:61775193-61775194(-) m6A 3'UTR//exon       28052920//27773535
chr17:61775328-61775329(-) m6A 3'UTR//exon       25456834//24981863//28052920//26404942//27773536
chr17:61775338-61775339(-) m6A 3'UTR//exon       25456834//24981863//28052920//26404942//27773536
chr17:61775474-61775475(-) m6A 3'UTR//exon       28052920
chr17:61775536-61775537(-) m6A 3'UTR//exon       28052920//27773536
chr17:61775644-61775645(-) m6A 3'UTR//exon       25456834//27773535//27773536
chr17:61775714-61775715(-) m6A 3'UTR//exon       25456834//27773536
chr17:61775758-61775759(-) m6A 3'UTR//exon//intron       25456834//24981863//27773536
chr17:61775782-61775783(-) m6A 3'UTR//exon//intron       25456834//24981863//27773536
chr17:61775933-61775934(-) m6A CDS//exon       25456834
chr17:61776246-61776247(-) m6A 5'UTR//CDS//exon//intron       27773536
chr17:61776267-61776268(-) m6A 5'UTR//CDS//exon//intron       27773536
chr17:61776582-61776583(-) m6A exon//intron       27773536
chr17:61776706-61776707(-) m6A 5'UTR//exon       25456834//27773536
chr17:61776838-61776839(-) m6A exon//intron       27773536
chr17:61776895-61776896(-) m6A exon//intron       27773536
chr17:61777351-61777352(-) m6A exon//intron       27371828//27773536
chr17:61777423-61777424(-) m6A 5'UTR//exon//intron       27371828//27773536
chr17:61777483-61777484(-) m6A 5'UTR//exon//intron       25456834//27371828
chr17:61777834-61777835(-) m6A 5'UTR//intron       25456834//27371828
chr17:61777927-61777928(-) m6A 5'UTR//intron       25456834//27371828
chr17:61778032-61778033(-) m6A 5'UTR//intron       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-let-7a-3p
Exosome Plasma     23663360
Exosome Plasma     24683445
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Extracellular vesicle Colon cancer cell line (LIM1863)     25330373
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
LIMD2
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-let-7a-3p
Interactor2: LIMD2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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