Detail Information

Basic Information:


  VIRBase ID:  

HHID00061515

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-363-5p:           ATXN1L:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-363-5p ATXN1L
miRBase
Accession/Entrez ID		 MIMAT0003385 342371
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - BOAT//BOAT1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-363-5p
rs1021883203 chrX:134169428    T/C
rs199822597 chrX:134169435    G/A
rs774988958 chrX:134169446    G/A
rs769433936 chrX:134169439    T/C
rs999048524 chrX:134169445    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ATXN1L
chr16:71892629(+) A-I      intronic
chr16:71892635(+) A-I      intronic
chr16:71892610(+) A-I      intronic
chr16:71907766(+) A-I      intronic
chr16:71892567(+) A-I      intronic
chr16:71892007(+) A-I      intronic
chr16:71892283(+) A-I      intronic
chr16:71892296(+) A-I      intronic
chr16:71892075(+) A-I      intronic
chr16:71892290(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ATXN1L
chr16:71892251(+) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ATXN1L
chr16:71881933-71881934(+) m6A 5'UTR//exon       24284625
chr16:71881968-71881969(+) m6A 5'UTR//exon       24284625
chr16:71882035-71882036(+) m6A exon//intron       24284625//24981863
chr16:71882040-71882041(+) m6A exon//intron       24284625//24981863
chr16:71882298-71882299(+) m6A exon//intron       -
chr16:71883628-71883629(+) m6A 5'UTR//intron       24284625//24209618
chr16:71883648-71883649(+) m6A CDS//intron       24284625//24209618
chr16:71883695-71883696(+) m6A CDS//intron       24284625//24209618//24981863
chr16:71883727-71883728(+) m6A CDS//intron       24284625//24209618//24981863
chr16:71883872-71883873(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr16:71883930-71883931(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22608085
chr16:71884304-71884305(+) m6A CDS//intron       24284625//24209618//24981863
chr16:71884375-71884376(+) m6A CDS//intron       24284625//24209618//24981863//22575960//22608085
chr16:71884455-71884456(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:71884461-71884462(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:71884536-71884537(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:71884569-71884570(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:71884591-71884592(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr16:71884630-71884631(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr16:71884637-71884638(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr16:71884685-71884686(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr16:71884719-71884720(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr16:71884787-71884788(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr16:71884848-71884849(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr16:71884857-71884858(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr16:71884863-71884864(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr16:71884915-71884916(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr16:71884997-71884998(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr16:71885102-71885103(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr16:71885110-71885111(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr16:71885177-71885178(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr16:71885399-71885400(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr16:71885502-71885503(+) Cm CDS//intron       -
chr16:71885713-71885714(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863
chr16:71885726-71885727(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863
chr16:71885732-71885733(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863
chr16:71885903-71885904(+) m6A 3'UTR//intron       24284625
chr16:71886204-71886205(+) m6A 3'UTR//intron       -
chr16:71888680-71888681(+) m6A 3'UTR//intron       -
chr16:71888736-71888737(+) m6A 3'UTR//intron       -
chr16:71889482-71889483(+) m6A 3'UTR//intron       24981863
chr16:71889541-71889542(+) m6A 3'UTR//intron       24981863//27773535
chr16:71893696-71893697(+) m6A intron       -
chr16:71893796-71893797(+) m6A intron       -
chr16:71893822-71893823(+) m6A intron       -
chr16:71894060-71894061(+) m6A intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-363-5p
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Serum     24683445
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Cell line (HEK-293)     22984580
ATXN1L
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-363-5p
Interactor2: ATXN1L

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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