Detail Information

Basic Information:


  VIRBase ID:  

HHID00061505

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-363-5p:           LAMP3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-363-5p LAMP3
miRBase
Accession/Entrez ID		 MIMAT0003385 27074
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CD208//DC LAMP//DC-LAMP//DCLAMP//LAMP//LAMP-3//TSC403

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-363-5p
rs1021883203 chrX:134169428    T/C
rs199822597 chrX:134169435    G/A
rs774988958 chrX:134169446    G/A
rs769433936 chrX:134169439    T/C
rs999048524 chrX:134169445    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LAMP3
chr3:182848053(-) A-I      intronic
chr3:182846509(-) A-I      intronic
chr3:182846534(-) A-I      intronic
chr3:182848241(-) A-I      intronic
chr3:182848219(-) A-I      intronic
chr3:182864968(-) A-I      intronic
chr3:182864949(-) A-I      intronic
chr3:182864948(-) A-I      intronic
chr3:182864588(-) A-I      intronic
chr3:182864566(-) A-I      intronic
chr3:182848156(-) A-I      intronic
chr3:182867148(-) A-I      intronic
chr3:182846457(-) A-I      intronic
chr3:182864398(-) A-I      intronic
chr3:182845860(-) A-I      intronic
chr3:182845827(-) A-I      intronic
chr3:182855767(-) A-I      intronic
chr3:182865586(-) A-I      intronic
chr3:182855745(-) A-I      intronic
chr3:182855719(-) A-I      intronic
chr3:182855705(-) A-I      intronic
chr3:182855693(-) A-I      intronic
chr3:182855612(-) A-I      intronic
chr3:182844999(-) A-I      intronic
chr3:182854921(-) A-I      intronic
chr3:182854888(-) A-I      intronic
chr3:182842558(-) A-I      intronic
chr3:182842533(-) A-I      intronic
chr3:182865701(-) A-I      intronic
chr3:182848111(-) A-I      intronic
chr3:182855752(-) A-I      intronic
chr3:182841103(-) A-I      3'UTR
chr3:182841102(-) A-I      3'UTR
chr3:182841084(-) A-I      3'UTR
chr3:182841117(-) A-I      3'UTR
chr3:182841112(-) A-I      3'UTR
chr3:182841090(-) A-I      3'UTR
chr3:182841104(-) A-I      3'UTR
chr3:182845142(-) A-I      intronic
chr3:182846523(-) A-I      intronic
chr3:182845045(-) A-I      intronic
chr3:182845752(-) A-I      intronic
chr3:182845755(-) A-I      intronic
chr3:182864842(-) A-I      intronic
chr3:182865665(-) A-I      intronic
chr3:182851343(-) A-I      intronic
chr3:182848115(-) A-I      intronic
chr3:182845730(-) A-I      intronic
chr3:182857059(-) A-I      intronic
chr3:182865778(-) A-I      intronic
chr3:182874000(-) A-I      intronic
chr3:182847948(-) A-I      intronic
chr3:182845089(-) A-I      intronic
chr3:182845824(-) A-I      intronic
chr3:182846605(-) A-I      intronic
chr3:182844995(-) A-I      intronic
chr3:182841325(-) A-I      3'UTR
chr3:182841235(-) A-I      3'UTR
chr3:182845675(-) A-I      intronic
chr3:182846609(-) A-I      intronic
chr3:182865594(-) A-I      intronic
chr3:182846596(-) A-I      intronic
chr3:182844953(-) A-I      intronic
chr3:182857102(-) A-I      intronic
chr3:182846533(-) A-I      intronic
chr3:182842464(-) A-I      intronic
chr3:182855704(-) A-I      intronic
chr3:182851215(-) A-I      intronic
chr3:182844952(-) A-I      intronic
chr3:182855812(-) A-I      intronic
chr3:182855884(-) A-I      intronic
chr3:182845204(-) A-I      intronic
chr3:182845814(-) A-I      intronic
chr3:182851281(-) A-I      intronic
chr3:182848085(-) A-I      intronic
chr3:182845050(-) A-I      intronic
chr3:182845119(-) A-I      intronic
chr3:182865760(-) A-I      intronic
chr3:182862626(-) A-I      intronic
chr3:182846468(-) A-I      intronic
chr3:182846597(-) A-I      intronic
chr3:182855806(-) A-I      intronic
chr3:182842498(-) A-I      intronic
chr3:182864989(-) A-I      intronic
chr3:182857066(-) A-I      intronic
chr3:182845194(-) A-I      intronic
chr3:182845738(-) A-I      intronic
chr3:182846497(-) A-I      intronic
chr3:182846602(-) A-I      intronic
chr3:182846557(-) A-I      intronic
chr3:182851280(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LAMP3
chr3:182844953(-) A-I intron -    22327324
chr3:182845194(-) A-I intron -    22327324
chr3:182845685(-) A-I intron -    22327324
chr3:182846533(-) A-I intron -    22327324
chr3:182846605(-) A-I intron -    22327324
chr3:182846609(-) A-I intron -    22327324
chr3:182844744(-) A-G intron -    22484847
chr3:182841207(-) G-A exon 3'UTR    22484847
chr3:182842464(-) A-G intron -    22484847
chr3:182842498(-) A-G intron -    22484847
chr3:182844952(-) A-G intron -    22484847
chr3:182844953(-) A-G intron -    22484847
chr3:182844995(-) A-G intron -    22484847
chr3:182845045(-) A-G intron -    22484847
chr3:182845050(-) A-G intron -    22484847
chr3:182845089(-) A-G intron -    22484847
chr3:182845119(-) A-G intron -    22484847
chr3:182845141(-) A-G intron -    22484847
chr3:182845142(-) A-G intron -    22484847
chr3:182845150(-) A-G intron -    22484847
chr3:182845194(-) A-G intron -    22484847
chr3:182845204(-) A-G intron -    22484847
chr3:182845675(-) A-G intron -    22484847
chr3:182845730(-) A-G intron -    22484847
chr3:182845738(-) A-G intron -    22484847
chr3:182845752(-) A-G intron -    22484847
chr3:182845755(-) A-G intron -    22484847
chr3:182845814(-) A-G intron -    22484847
chr3:182845824(-) A-G intron -    22484847
chr3:182845935(-) G-T intron -    22484847
chr3:182846468(-) A-G intron -    22484847
chr3:182846494(-) A-G intron -    22484847
chr3:182846497(-) A-G intron -    22484847
chr3:182846523(-) A-G intron -    22484847
chr3:182846533(-) A-G intron -    22484847
chr3:182846557(-) A-G intron -    22484847
chr3:182846596(-) A-G intron -    22484847
chr3:182846597(-) A-G intron -    22484847
chr3:182846602(-) A-G intron -    22484847
chr3:182846605(-) A-G intron -    22484847
chr3:182846609(-) A-G intron -    22484847
chr3:182846820(-) T-C intron -    22484847
chr3:182848075(-) A-G intron -    22484847
chr3:182848085(-) A-G intron -    22484847
chr3:182851281(-) A-G intron -    22484847
chr3:182851343(-) A-G intron -    22484847
chr3:182851395(-) A-G intron -    22484847
chr3:182855675(-) A-G intron -    22484847
chr3:182855704(-) A-G intron -    22484847
chr3:182855806(-) A-G intron -    22484847
chr3:182855807(-) A-G intron -    22484847
chr3:182855812(-) A-G intron -    22484847
chr3:182856933(-) A-G intron -    22484847
chr3:182856960(-) A-G intron -    22484847
chr3:182857066(-) A-G intron -    22484847
chr3:182857102(-) A-G intron -    22484847
chr3:182864842(-) A-G intron -    22484847
chr3:182864931(-) A-G intron -    22484847
chr3:182864987(-) A-G intron -    22484847
chr3:182864989(-) A-G intron -    22484847
chr3:182865594(-) A-G intron -    22484847
chr3:182865665(-) A-G intron -    22484847
chr3:182865704(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LAMP3
chr3:182871523-182871524(-) m6A CDS       27773535//27371828
chr3:182871555-182871556(-) m6A CDS       28052920//27773535//27371828
chr3:182871648-182871649(-) m6A CDS       24209618//24981863//28052920//27773535//27371828
chr3:182871732-182871733(-) m6A CDS       24209618//24981863//28052920//27773535
chr3:182871755-182871756(-) m6A CDS       24209618//24981863//28052920//27773535
chr3:182871789-182871790(-) m6A CDS       24209618//24981863//28052920//27773535
chr3:182871950-182871951(-) m6A CDS       24209618//28052920//27773535
chr3:182871999-182872000(-) m6A CDS       24209618//28052920//27773535
chr3:182872041-182872042(-) m6A CDS       28052920//27773535
chr3:182872078-182872079(-) m6A CDS       28052920//27773535
chr3:182872088-182872089(-) m6A CDS       28052920//27773535
chr3:182872131-182872132(-) m6A CDS       27371828
chr3:182878651-182878652(-) m6A 5'UTR//exon//intron       27371828
chr3:182878711-182878712(-) m6A 5'UTR//exon//intron       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-363-5p
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Serum     24683445
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Cell line (HEK-293)     22984580
LAMP3
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-363-5p
Interactor2: LAMP3

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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