Detail Information

Basic Information:


  VIRBase ID:  

HHID00061394

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-651-5p:           TCF4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-651-5p TCF4
miRBase
Accession/Entrez ID		 MIMAT0003321 6925
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - bHLHb19//CDG2T//E2-2//FECD3//ITF-2//ITF2//PTHS//SEF-2//SEF2//SEF2-1//SEF2-1A//SEF2-1B//SEF2-1D//TCF-4

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-651-5p
rs111336920 chrX:8126995    A/G
rs1166654464 chrX:8126990    G/A
rs1450152007 chrX:8127000    T/C
rs780175385 chrX:8127001    G/A
rs758413295 chrX:8126982    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TCF4
chr18:52962640(-) A-I      intronic
chr18:52962639(-) A-I      intronic
chr18:53060495(-) A-I      intronic
chr18:53060532(-) A-I      intronic
chr18:53240207(-) A-I      intronic
chr18:53060467(-) A-I      intronic
chr18:53196224(-) A-I      intronic
chr18:53099434(-) A-I      intronic
chr18:53099316(-) A-I      intronic
chr18:53028026(-) A-I      intronic
chr18:53221744(-) A-I      intronic
chr18:53196287(-) A-I      intronic
chr18:53104589(-) A-I      intronic
chr18:53060465(-) A-I      intronic
chr18:53240159(-) A-I      intronic
chr18:53105229(-) A-I      intronic
chr18:53105228(-) A-I      intronic
chr18:53099412(-) A-I      intronic
chr18:53043252(-) A-I      intronic
chr18:53043251(-) A-I      intronic
chr18:53043250(-) A-I      intronic
chr18:53029497(-) A-I      intronic
chr18:53029494(-) A-I      intronic
chr18:53052836(-) A-I      intronic
chr18:53241648(-) A-I      intronic
chr18:53237892(-) A-I      intronic
chr18:53198441(-) A-I      intronic
chr18:53196322(-) A-I      intronic
chr18:52951462(-) A-I      intronic
chr18:53218363(-) A-I      intronic
chr18:52997535(-) A-I      intronic
chr18:53059057(-) A-I      intronic
chr18:53059585(-) A-I      intronic
chr18:53241622(-) A-I      intronic
chr18:53218449(-) A-I      intronic
chr18:53216339(-) A-I      intronic
chr18:53240245(-) A-I      intronic
chr18:53196297(-) A-I      intronic
chr18:53028055(-) A-I      intronic
chr18:53218379(-) A-I      intronic
chr18:53043430(-) A-I      intronic
chr18:53098608(-) A-I      intronic
chr18:53218313(-) A-I      intronic
chr18:53028070(-) A-I      intronic
chr18:53237891(-) A-I      intronic
chr18:53241729(-) A-I      intronic
chr18:53043367(-) A-I      intronic
chr18:53241720(-) A-I      intronic
chr18:53043516(-) A-I      intronic
chr18:52930756(-) A-I      intronic
chr18:53029495(-) A-I      intronic
chr18:53030778(-) A-I      intronic
chr18:53241688(-) A-I      intronic
chr18:53196292(-) A-I      intronic
chr18:53198378(-) A-I      intronic
chr18:52962101(-) A-I      intronic
chr18:53047251(-) A-I      intronic
chr18:53037529(-) A-I      intronic
chr18:52930799(-) A-I      intronic
chr18:53114154(-) A-I      intronic
chr18:53213379(-) A-I      intronic
chr18:53056245(-) A-I      intronic
chr18:53037459(-) A-I      intronic
chr18:53028251(-) A-I      intronic
chr18:53237942(-) A-I      intronic
chr18:53043377(-) A-I      intronic
chr18:53037384(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TCF4
chr18:52989299(-) A-I intron -    15258596
chr18:52989360(-) A-I intron -    15258596
chr18:52989420(-) A-I intron -    15258596
chr18:52906132(-) A-G intron -    22484847
chr18:52906135(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TCF4
chr18:52889698-52889699(-) m6A 3'UTR       27773535
chr18:52890367-52890368(-) m6A 3'UTR       27773535
chr18:52890447-52890448(-) m6A 3'UTR       27773535
chr18:52890458-52890459(-) m6A 3'UTR       27773535
chr18:52890534-52890535(-) m6A 3'UTR       27773535
chr18:52891087-52891088(-) m6A 3'UTR       27773535
chr18:52891461-52891462(-) m6A 3'UTR       24981863//27773535//22608085
chr18:52891487-52891488(-) m6A 3'UTR       24981863//27773535//22608085
chr18:52891538-52891539(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr18:52891549-52891550(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr18:52891568-52891569(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr18:52891710-52891711(-) m6A 3'UTR       27773535
chr18:52891743-52891744(-) m6A 3'UTR       27773535
chr18:52892099-52892100(-) m6A 3'UTR       24981863
chr18:52892105-52892106(-) m6A 3'UTR       24981863
chr18:52894648-52894649(-) m6A 3'UTR       27773535
chr18:52894665-52894666(-) m6A 3'UTR       27773535
chr18:52894726-52894727(-) m6A 3'UTR       24981863//27773535
chr18:52894819-52894820(-) m6A 3'UTR       24981863//27773535
chr18:52894854-52894855(-) m6A 3'UTR       24981863//27773535
chr18:52894929-52894930(-) m6A 3'UTR       24981863//28052920//27773535//22608085
chr18:52894948-52894949(-) m6A 3'UTR       24284625//24981863//28052920//27773535//22608085
chr18:52894977-52894978(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr18:52894990-52894991(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr18:52895080-52895081(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535//22608085
chr18:52895088-52895089(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535//22608085
chr18:52895150-52895151(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535//22608085
chr18:52895185-52895186(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535//22608085
chr18:52895195-52895196(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535//22608085
chr18:52895225-52895226(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535//22608085
chr18:52895232-52895233(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr18:52895464-52895465(-) m6A CDS//exon       24981863//27773535
chr18:52896140-52896141(-) m6A CDS//exon       27773535//27773536
chr18:52896280-52896281(-) Cm CDS//exon       -
chr18:52896289-52896290(-) m6A CDS//exon       24981863//27773535
chr18:52896361-52896362(-) m6A exon//intron       27773535
chr18:52896375-52896376(-) m6A exon//intron       27773535
chr18:52896388-52896389(-) m6A exon//intron       27773535
chr18:52899796-52899797(-) m6A CDS//exon       27773535
chr18:52899814-52899815(-) m6A CDS//exon       27773535
chr18:52899823-52899824(-) m6A CDS//exon       27773535
chr18:52899888-52899889(-) m6A CDS//exon       27773535
chr18:52901789-52901790(-) m6A CDS//exon       27773535
chr18:52901801-52901802(-) m6A CDS//exon       27773535
chr18:52927217-52927218(-) m6A CDS//exon//intron       27773535
chr18:52928728-52928729(-) m6A CDS//exon       27773535
chr18:52937168-52937169(-) m6A CDS//exon       27773535
chr18:52946821-52946822(-) m6A CDS//exon       27773535
chr18:52946846-52946847(-) m6A CDS//exon       27773535
chr18:52969665-52969666(-) m6A CDS//intron       27773535
chr18:52969703-52969704(-) m6A CDS//intron       -
chr18:52969727-52969728(-) m6A 5'UTR//intron       -
chr18:52988971-52988972(-) m6A 5'UTR//exon//intron       -
chr18:52989029-52989030(-) m6A 5'UTR//exon//intron       -
chr18:52989251-52989252(-) m6A 5'UTR//intron       27773535
chr18:52989261-52989262(-) m6A 5'UTR//intron       27773535
chr18:52989298-52989299(-) m6A 5'UTR//intron       27773535
chr18:52989354-52989355(-) m6A 5'UTR//intron       27773535
chr18:52989359-52989360(-) m6A 5'UTR//intron       27773535
chr18:53070743-53070744(-) m6A 5'UTR//CDS//exon       -
chr18:53070784-53070785(-) m6A 5'UTR//intron       -
chr18:53070842-53070843(-) m6A 5'UTR//intron       -
chr18:53256983-53256984(-) m6A 5'UTR//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-651-5p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
TCF4
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-651-5p
Interactor2: TCF4

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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